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Cellpose Segmentation generates incomplete masks #35

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sophiamaedler opened this issue May 13, 2024 · 0 comments
Open

Cellpose Segmentation generates incomplete masks #35

sophiamaedler opened this issue May 13, 2024 · 0 comments
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@sophiamaedler @namsaraeva
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@sophiamaedler
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Sometimes cell pose generates incomplete masks like this:

Screenshot 2024-05-13 at 17 14 32

In the cell pose segmentation method we should implement a step to automatically remove these.

Maybe a criteria we could select for is that for a mask to be considered valid it can not have any holes?
@sophiamaedler sophiamaedler added the bug Something isn't working label May 13, 2024
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@sophiamaedler @namsaraeva