forked from HBPMedical/algorithm-repository
/
docker-compose.yml
136 lines (127 loc) · 3.31 KB
/
docker-compose.yml
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---
version: '2'
services:
db:
image: postgres:9.6.5-alpine
hostname: db
environment:
POSTGRES_PASSWORD: test
wait_dbs:
image: "waisbrot/wait"
restart: "no"
environment:
TARGETS: "db:5432"
TIMEOUT: 60
create_dbs:
image: "hbpmip/create-databases:1.0.0"
restart: "no"
environment:
DB_HOST: db
DB_PORT: 5432
DB_ADMIN_USER: postgres
DB_ADMIN_PASSWORD: test
DB1: features
USER1: features
PASSWORD1: featurespwd
DB2: woken
USER2: woken
PASSWORD2: wokenpwd
depends_on:
- db
sample_data_db_setup:
image: "hbpmip/sample-data-db-setup:0.6.0"
container_name: "data-db-setup"
restart: "no"
environment:
FLYWAY_DBMS: postgresql
FLYWAY_HOST: db
FLYWAY_PORT: 5432
FLYWAY_DATABASE_NAME: features
FLYWAY_USER: postgres
FLYWAY_PASSWORD: test
depends_on:
- db
woken_db_setup:
image: "hbpmip/woken-db-setup:1.0.2"
container_name: "woken-db-setup"
restart: "no"
environment:
FLYWAY_DBMS: postgresql
FLYWAY_HOST: db
FLYWAY_PORT: 5432
FLYWAY_DATABASE_NAME: woken
FLYWAY_USER: postgres
FLYWAY_PASSWORD: test
depends_on:
- db
linreg:
image: "hbpmip/r-linear-regression:latest"
container_name: "linreg"
restart: "no"
environment:
NODE: job_test
JOB_ID: 1
IN_DBI_DRIVER: PostgreSQL
IN_JDBC_DRIVER: org.postgresql.Driver
IN_JDBC_URL: jdbc:postgresql://db:5432/features
IN_DB_HOST: db
IN_DB_PORT: 5432
IN_DB_NAME: features
IN_DB_USER: features
IN_DB_PASSWORD: featurespwd
OUT_DBI_DRIVER: PostgreSQL
OUT_JDBC_DRIVER: org.postgresql.Driver
OUT_JDBC_URL: jdbc:postgresql://db:5432/woken
OUT_DB_HOST: db
OUT_DB_PORT: 5432
OUT_DB_NAME: woken
OUT_DB_USER: woken
OUT_DB_PASSWORD: wokenpwd
PARAM_variables: "score_test1"
PARAM_covariables: "stress_before_test1,iq,cognitive_task2,practice_task2,response_time_task2,college_math,score_math_course1,score_math_course2"
PARAM_query: "SELECT stress_before_test1,score_test1,iq,cognitive_task2,practice_task2,response_time_task2,college_math,score_math_course1,score_math_course2 FROM SAMPLE_DATA"
links:
- "db:db"
pfa_validator:
image: "hbpmip/pfa-validator:0.10.1"
container_name: "pfa-validator"
environment:
INPUT_METHOD: POSTGRESQL
DB_HOST: db
DB_PORT: 5432
DB_NAME: woken
DB_USER: woken
DB_PASSWORD: wokenpwd
JOB_ID: 1
FEATURES_DB_HOST: db
FEATURES_DB_PORT: 5432
FEATURES_DB_NAME: features
FEATURES_DB_USER: features
FEATURES_DB_PASSWORD: featurespwd
FEATURES_DB_TABLE: sample_data
links:
- "db:db"
r_tests:
build:
context: .
dockerfile: Dockerfile
container_name: "r-integration-tests"
command: test
restart: "no"
environment:
NODE: job_test
JOB_ID: 1
IN_DBI_DRIVER: PostgreSQL
IN_DB_HOST: db
IN_DB_PORT: 5432
IN_DB_NAME: features
IN_DB_USER: features
IN_DB_PASSWORD: featurespwd
OUT_DBI_DRIVER: PostgreSQL
OUT_DB_HOST: db
OUT_DB_PORT: 5432
OUT_DB_NAME: woken
OUT_DB_USER: woken
OUT_DB_PASSWORD: wokenpwd
links:
- "db:db"