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feature_tissuevolume_pfa.json
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feature_tissuevolume_pfa.json
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{
"name": "summary_statistics",
"doc": "Descriptive statistics for a dataset\n",
"metadata": {
"docker_image": "hbpmip/r-summary-stats:latest"
},
"input": {
"type": "null"
},
"output": {
"type": "null"
},
"cells": {
"query": {
"type": {
"doc": "Definition of the query that has produced this model",
"name": "Query",
"type": "record",
"fields": [
{
"name": "variables",
"doc": "List of dependent variables",
"type": {
"type": "array",
"items": {
"type": "string"
}
}
},
{
"name": "covariables",
"doc": "List of explanatory variables",
"type": {
"type": "array",
"items": {
"type": "string"
}
}
},
{
"name": "groups",
"doc": "The form ‘first:second’ indicates the set of terms obtained by taking the interactions of all terms in ‘first’\nwith all terms in ‘second’.\nThe specification ‘first*second’ indicates the _cross_ of ‘first’ and ‘second’.\nThis is the same as ‘first + second + first:second’\"\n",
"type": {
"type": "array",
"items": {
"type": "string"
}
}
},
{
"name": "sql",
"type": "string",
"doc": "SQL query"
},
{
"name": "count",
"type": "int",
"doc": "Number of records selected by the query"
}
]
},
"init": {
"variables": [],
"covariables": [
"tissue1_volume"
],
"groups": [
"feature_name"
],
"sql": "select tissue1_volume, feature_name from brain_feature order by tissue1_volume",
"count": 100
}
},
"summary": {
"type": {
"doc": "Descriptive statistics for the dataset",
"type": "record",
"name": "DescriptiveStatistics",
"fields": [
{
"name": "tissue1_volume",
"type": {
"type": "record",
"name": "ContinuousVariableSummary",
"namespace": "summary",
"fields": [
{
"name": "min",
"type": "double",
"doc": "Minimum value"
},
{
"name": "q1",
"type": "double",
"doc": "First quartile"
},
{
"name": "median",
"type": "double",
"doc": "Median value"
},
{
"name": "q3",
"type": "double",
"doc": "Third quartile"
},
{
"name": "max",
"type": "double",
"doc": "Maximum value"
},
{
"name": "mean",
"type": "double",
"doc": "Mean value"
},
{
"name": "std",
"type": "double",
"doc": "Standard deviation"
},
{
"name": "sum",
"type": "double",
"doc": "Sum"
},
{
"name": "count",
"type": "double",
"doc": "Count"
}
]
}
},
{
"name": "feature_name",
"type": {
"type": "record",
"name": "FactorVariableSummary",
"namespace": "summary",
"fields": [
{
"name": "count",
"type": "double",
"doc": "Count"
},
{
"name": "factors",
"type": {
"type": "array",
"items": {
"type": "string"
}
},
"doc": "List of values"
}
]
}
}
]
},
"init": {
"tissue1_volume": {
"min": 0.0068206,
"q1": 0.00857095,
"median": 0.00931775,
"q3": 0.009805875,
"max": 0.011463,
"mean": 0.009191096,
"std": 0.000879557088828855,
"sum": 0.9191096,
"count": 100
},
"feature_name": {
"count": 100,
"factors": [
"Hippocampus_L",
"Hippocampus_R"
]
}
}
}
},
"action": null
}