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failed to install #8
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I have never seen that problem, but have you tried upgrading pip before running pip install? Have you tried what's suggested in the blog post here? The problem might be that your docker container misses some dependencies required by imagecodecs |
Yes i did update pip, still the same problem. |
The python dependencies are all specified in the package, but imagecodecs might have to be built for your system so maybe the dependencies for building this package are missing. What base image are you using for your docker container, so I could try to replicate the issue. |
this is the content of dockerfile
|
I used your Dockerfile, only adding eyepie to the pip install command. Then I build the container without any problems and could import eyepy and imagecodecs in a Jupyter notebook. So I can not reproduce your issue are you sure it persists when adding eyepie to the Dockerfile and then building the container? |
I installed the package inside the container, I will try rebuilding the image again as you did and update you. |
still, I have a problem. I do not know what is the reason. I tried installing the package on Colab and it was installed properly. |
sorry this comment was meant for eyepy not oct-converter, I missed the repo |
no you didn't, i got confused abotu the repo! have deleted my message |
Do you get the same Error message when building the container? |
Hi Oli, This is my updated docker file
and this is the error I get
|
Could you please tell me your docker daemon is running on which OS? is it Linux or macOS My docker daemon is running on top of M1 macOS, which I think isn't why the image builds correctly. |
My docker daemon is running on Ubuntu Linux. There seems to be a known issue with imagecodecs on M1 macOS. I am going to upgrade the imagecodecs package to the latest version in the next release. That might help especially when there were also problems with running directly on macOS. The docker issue seems to be different. I can build the container from your Dockerfile with only eyepie but for you it seems to complain about a missing numpy. Maybe add numpy as an install before eyepie to your Dockerfile but I don't know why this should be necessary. Since you are mainly interested in the E2E Reader another option for you might be to install eyepie without imagecodecs which is only required to read tiff files from the XML export not for reading E2E. |
Hi Oli, It is fine with the installation, I do install the package on the campus HPC and it worked well for me. I tried to read the E2E files but I get out of index error, I also tried to load the drusen patient example but it returned a response not the oct. Should I put new issues here or in a new issue?? |
Would be great if you can open a new issue. |
Description
I try to install your library but I get:
What I Did
The text was updated successfully, but these errors were encountered: