Note
Only works on interleaved R1/R2 fastq file OR NanoPore reads.
NCBI scubber removes human reads from sequencing data
- input : File
- Your input fastq file. Can be compressed but you must check "decompressed" if so
- interleaved : Boolean
- Is the file interleaved? (TRUE/FALSE, Illumina)
- decompressed: Boolean
- Check if your file is compressed. You can decompress it directly in the UI here to the name: decompressed.fastq in the same path as the input file
- Filtered File : .filtered.fastq
- removed of human reads