/
Euler.txt
69 lines (53 loc) · 2 KB
/
Euler.txt
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
// Parameter file to register Parelsnoer T1 to MNI space
(UseDirectionCosines "true")
//ImageTypes
(FixedInternalImagePixelType "float")
(FixedImageDimension 3)
(MovingInternalImagePixelType "float")
(MovingImageDimension 3)
//Components
(Registration "MultiResolutionRegistration")
(FixedImagePyramid "FixedSmoothingImagePyramid")
(MovingImagePyramid "MovingSmoothingImagePyramid")
(Interpolator "BSplineInterpolator")
(Metric "AdvancedMattesMutualInformation")
(Optimizer "AdaptiveStochasticGradientDescent")
(ResampleInterpolator "FinalBSplineInterpolator")
(Resampler "DefaultResampler")
(Transform "EulerTransform")
(ErodeMask "false" )
(NumberOfResolutions 5)
(HowToCombineTransforms "Compose")
(AutomaticTransformInitialization "true")
(AutomaticScalesEstimation "true")
(AutomaticTransformInitializationMethod "GeometricalCenter")
(WriteTransformParametersEachIteration "false")
(WriteResultImage "true")
(CompressResultImage "true")
(WriteResultImageAfterEachResolution "false")
(ResultImageFormat "nii")
(ShowExactMetricValue "false")
//Maximum number of iterations in each resolution level:
(MaximumNumberOfIterations 2000 )
//Number of grey level bins in each resolution level:
(NumberOfHistogramBins 32 )
(FixedLimitRangeRatio 0.0)
(MovingLimitRangeRatio 0.0)
(FixedKernelBSplineOrder 3)
(MovingKernelBSplineOrder 3)
//Number of spatial samples used to compute the mutual information in each resolution level:
(ImageSampler "RandomCoordinate")
(FixedImageBSplineInterpolationOrder 1 )
(UseRandomSampleRegion "false")
(NumberOfSpatialSamples 4000 )
(NewSamplesEveryIteration "true")
(CheckNumberOfSamples "true")
(MaximumNumberOfSamplingAttempts 10)
//Order of B-Spline interpolation used in each resolution level:
(BSplineInterpolationOrder 1)
//Order of B-Spline interpolation used for applying the final deformation:
(FinalBSplineInterpolationOrder 3)
//Default pixel value for pixels that come from outside the picture:
(DefaultPixelValue 0)
//SP: Param_A in each resolution level. a_k = a/(A+k+1)^alpha
(SP_A 20.0 )