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consts.py
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consts.py
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from pytorch_transformers import DistilBertTokenizer
from transformers import DebertaV2Config, DebertaTokenizer, BertTokenizer, RobertaTokenizer, DistilBertConfig, BertConfig, \
RobertaConfig
from .processors import ConllNerProcessor, GedProcessor, JNLNerProcessor, BC2NerProcessor, SimplifiedNerProcessor, \
BC4NerProcessor, MNLIProcessor, HANSProcessor, MNISTProcessor, CIFAR10Processor, CIFAR100Processor, WNUT17NerProcessor
from .metrics import get_ner_metrics, get_ged_metrics, get_ir_metrics, get_wnut_metrics
from .bert_models import BertTokenClassifier, RobertaTokenClassifier, DebertaTokenClassifier
def get_processors():
return {
"conll03": ConllNerProcessor,
"conll03-25loc-1": ConllNerProcessor,
"conll03-25loc-2": ConllNerProcessor,
"conll03-25loc-3": ConllNerProcessor,
"conll03-25loc-1-binary": GedProcessor,
"conll03-25loc-2-binary": GedProcessor,
"conll03-25loc-3-binary": GedProcessor,
"conll03-50loc-1": ConllNerProcessor,
"conll03-50loc-2": ConllNerProcessor,
"conll03-50loc-3": ConllNerProcessor,
"conll03-25misc-1": ConllNerProcessor,
"conll03-25misc-2": ConllNerProcessor,
"conll03-25misc-3": ConllNerProcessor,
"conll03-25misc-1-binary": GedProcessor,
"conll03-25misc-2-binary": GedProcessor,
"conll03-25misc-3-binary": GedProcessor,
"conll03-50misc-1": ConllNerProcessor,
"conll03-50misc-2": ConllNerProcessor,
"conll03-50misc-3": ConllNerProcessor,
"conll03-simp": GedProcessor,
"conll03-5misc": ConllNerProcessor,
"conll03-5loc": ConllNerProcessor,
"conll03-15misc": ConllNerProcessor,
"conll03-15loc": ConllNerProcessor,
"conll03-25misc": ConllNerProcessor,
"conll03-25loc": ConllNerProcessor,
"conll03-35misc": ConllNerProcessor,
"conll03-35loc": ConllNerProcessor,
"conll03-45misc": ConllNerProcessor,
"conll03-45loc": ConllNerProcessor,
"conll03-55misc": ConllNerProcessor,
"conll03-55loc": ConllNerProcessor,
"conll03-65misc": ConllNerProcessor,
"conll03-65loc": ConllNerProcessor,
"conll03-75misc": ConllNerProcessor,
"conll03-75loc": ConllNerProcessor,
"conll03-85misc": ConllNerProcessor,
"conll03-85loc": ConllNerProcessor,
"conll03-95misc": ConllNerProcessor,
"conll03-95loc": ConllNerProcessor,
"conll03-105misc": ConllNerProcessor,
"conll03-105loc": ConllNerProcessor,
"conll03-115misc": ConllNerProcessor,
"conll03-115loc": ConllNerProcessor,
"conll03-125misc": ConllNerProcessor,
"conll03-125loc": ConllNerProcessor,
"conll03-135misc": ConllNerProcessor,
"conll03-135loc": ConllNerProcessor,
"conll03-145misc": ConllNerProcessor,
"conll03-145loc": ConllNerProcessor,
"conll03-155misc": ConllNerProcessor,
"conll03-155loc": ConllNerProcessor,
"conll03-165misc": ConllNerProcessor,
"conll03-165loc": ConllNerProcessor,
"conll03-175misc": ConllNerProcessor,
"conll03-175loc": ConllNerProcessor,
"conll03-185misc": ConllNerProcessor,
"conll03-185loc": ConllNerProcessor,
"conll03-195misc": ConllNerProcessor,
"conll03-195loc": ConllNerProcessor,
"conll03-200misc": ConllNerProcessor,
"conll03-200loc": ConllNerProcessor,
"conll03-500misc": ConllNerProcessor,
"conll03-500loc": ConllNerProcessor,
"conll03-1000misc": ConllNerProcessor,
"conll03-1000loc": ConllNerProcessor,
"fce": GedProcessor,
"w&i": GedProcessor,
"jnlpba": JNLNerProcessor,
"jnlpba-binary": GedProcessor,
"jnlpba-simp": SimplifiedNerProcessor,
"jnlpba-5cell_line": JNLNerProcessor,
"jnlpba-5cell_type": JNLNerProcessor,
"jnlpba-5rna": JNLNerProcessor,
"jnlpba-10cell_line": JNLNerProcessor,
"jnlpba-10cell_type": JNLNerProcessor,
"jnlpba-10dna": JNLNerProcessor,
"jnlpba-10protein": JNLNerProcessor,
"jnlpba-10rna": JNLNerProcessor,
"jnlpba-25cell_line": JNLNerProcessor,
"jnlpba-25cell_type": JNLNerProcessor,
"jnlpba-25dna-1": JNLNerProcessor,
"jnlpba-25dna-2": JNLNerProcessor,
"jnlpba-25dna-3": JNLNerProcessor,
"jnlpba-25dna-binary": GedProcessor,
"jnlpba-25dna-1-binary": GedProcessor,
"jnlpba-25dna-2-binary": GedProcessor,
"jnlpba-25dna-3-binary": GedProcessor,
"jnlpba-25protein-1": JNLNerProcessor,
"jnlpba-25protein-2": JNLNerProcessor,
"jnlpba-25protein-3": JNLNerProcessor,
"jnlpba-25protein-binary": GedProcessor,
"jnlpba-25protein-1-binary": GedProcessor,
"jnlpba-25protein-2-binary": GedProcessor,
"jnlpba-25protein-3-binary": GedProcessor,
"jnlpba-25rna": JNLNerProcessor,
"jnlpba-50cell_line": JNLNerProcessor,
"jnlpba-50cell_type": JNLNerProcessor,
"jnlpba-50dna": JNLNerProcessor,
"jnlpba-50protein": JNLNerProcessor,
"jnlpba-50rna": JNLNerProcessor,
"jnlpba-100cell_line": JNLNerProcessor,
"jnlpba-100cell_type": JNLNerProcessor,
"jnlpba-100dna": JNLNerProcessor,
"jnlpba-100protein": JNLNerProcessor,
"jnlpba-100rna": JNLNerProcessor,
"jnlpba-1000cell_line": JNLNerProcessor,
"jnlpba-1000cell_type": JNLNerProcessor,
"jnlpba-5dna": JNLNerProcessor,
"jnlpba-5protein": JNLNerProcessor,
"jnlpba-15dna": JNLNerProcessor,
"jnlpba-15protein": JNLNerProcessor,
"jnlpba-25dna": JNLNerProcessor,
"jnlpba-25protein": JNLNerProcessor,
"jnlpba-35dna": JNLNerProcessor,
"jnlpba-35protein": JNLNerProcessor,
"jnlpba-45dna": JNLNerProcessor,
"jnlpba-45protein": JNLNerProcessor,
"jnlpba-55dna": JNLNerProcessor,
"jnlpba-55protein": JNLNerProcessor,
"jnlpba-65dna": JNLNerProcessor,
"jnlpba-65protein": JNLNerProcessor,
"jnlpba-75dna": JNLNerProcessor,
"jnlpba-75protein": JNLNerProcessor,
"jnlpba-85dna": JNLNerProcessor,
"jnlpba-85protein": JNLNerProcessor,
"jnlpba-95dna": JNLNerProcessor,
"jnlpba-95protein": JNLNerProcessor,
"jnlpba-105dna": JNLNerProcessor,
"jnlpba-105protein": JNLNerProcessor,
"jnlpba-115dna": JNLNerProcessor,
"jnlpba-115protein": JNLNerProcessor,
"jnlpba-125dna": JNLNerProcessor,
"jnlpba-125protein": JNLNerProcessor,
"jnlpba-135dna": JNLNerProcessor,
"jnlpba-135protein": JNLNerProcessor,
"jnlpba-145dna": JNLNerProcessor,
"jnlpba-145protein": JNLNerProcessor,
"jnlpba-155dna": JNLNerProcessor,
"jnlpba-155protein": JNLNerProcessor,
"jnlpba-165dna": JNLNerProcessor,
"jnlpba-165protein": JNLNerProcessor,
"jnlpba-175dna": JNLNerProcessor,
"jnlpba-175protein": JNLNerProcessor,
"jnlpba-185dna": JNLNerProcessor,
"jnlpba-185protein": JNLNerProcessor,
"jnlpba-195dna": JNLNerProcessor,
"jnlpba-195protein": JNLNerProcessor,
"jnlpba-200dna": JNLNerProcessor,
"jnlpba-200protein": JNLNerProcessor,
"jnlpba-500dna": JNLNerProcessor,
"jnlpba-500protein": JNLNerProcessor,
"jnlpba-1000dna": JNLNerProcessor,
"jnlpba-1000protein": JNLNerProcessor,
"bc2gm": BC2NerProcessor,
"bc2gm-simp": SimplifiedNerProcessor,
"bc4chemd": BC4NerProcessor,
"bc4chemd-simp": SimplifiedNerProcessor,
"mnli": MNLIProcessor,
"hans": HANSProcessor,
"wnut17": WNUT17NerProcessor,
"mnist": MNISTProcessor,
"mnist-1shot": MNISTProcessor,
"cifar10": CIFAR10Processor,
"cifar10-1shot": CIFAR10Processor,
"cifar100": CIFAR100Processor,
"cifar100-1shot": CIFAR100Processor
}
def get_data_dirs_cardinal():
return {
"conll03": "<data_path>/conll03_ner/ner/full",
"conll03-25loc-1": "<data_path>/conll03_ner/ner/25LOC_1",
"conll03-25loc-2": "<data_path>/conll03_ner/ner/25LOC_2",
"conll03-25loc-3": "<data_path>/conll03_ner/ner/25LOC_3",
"conll03-25loc-1-binary": "<data_path>/conll03_ner/ner/25LOC_binary_1",
"conll03-25loc-2-binary": "<data_path>/conll03_ner/ner/25LOC_binary_2",
"conll03-25loc-3-binary": "<data_path>/conll03_ner/ner/25LOC_binary_3",
"conll03-50loc-1": "<data_path>/conll03_ner/ner/50LOC_1",
"conll03-50loc-2": "<data_path>/conll03_ner/ner/50LOC_2",
"conll03-50loc-3": "<data_path>/conll03_ner/ner/50LOC_3",
"conll03-25misc-1": "<data_path>/conll03_ner/ner/25MISC_1",
"conll03-25misc-2": "<data_path>/conll03_ner/ner/25MISC_2",
"conll03-25misc-3": "<data_path>/conll03_ner/ner/25MISC_3",
"conll03-25misc-1-binary": "<data_path>/conll03_ner/ner/25MISC_binary_1",
"conll03-25misc-2-binary": "<data_path>/conll03_ner/ner/25MISC_binary_2",
"conll03-25misc-3-binary": "<data_path>/conll03_ner/ner/25MISC_binary_3",
"conll03-50misc-1": "<data_path>/conll03_ner/ner/50MISC_1",
"conll03-50misc-2": "<data_path>/conll03_ner/ner/50MISC_2",
"conll03-50misc-3": "<data_path>/conll03_ner/ner/50MISC_3",
"conll03-simp": "<data_path>/conll03_ner/tsv",
"conll03-5misc": "<data_path>/conll03_ner/ner/5MISC",
"conll03-5loc": "<data_path>/conll03_ner/ner/5LOC",
"conll03-15misc": "<data_path>/conll03_ner/ner/15MISC",
"conll03-15loc": "<data_path>/conll03_ner/ner/15LOC",
"conll03-25misc": "<data_path>/conll03_ner/ner/25MISC",
"conll03-25loc": "<data_path>/conll03_ner/ner/25LOC",
"conll03-35misc": "<data_path>/conll03_ner/ner/35MISC",
"conll03-35loc": "<data_path>/conll03_ner/ner/35LOC",
"conll03-45misc": "<data_path>/conll03_ner/ner/45MISC",
"conll03-45loc": "<data_path>/conll03_ner/ner/45LOC",
"conll03-55misc": "<data_path>/conll03_ner/ner/55MISC",
"conll03-55loc": "<data_path>/conll03_ner/ner/55LOC",
"conll03-65misc": "<data_path>/conll03_ner/ner/65MISC",
"conll03-65loc": "<data_path>/conll03_ner/ner/65LOC",
"conll03-75misc": "<data_path>/conll03_ner/ner/75MISC",
"conll03-75loc": "<data_path>/conll03_ner/ner/75LOC",
"conll03-85misc": "<data_path>/conll03_ner/ner/85MISC",
"conll03-85loc": "<data_path>/conll03_ner/ner/85LOC",
"conll03-95misc": "<data_path>/conll03_ner/ner/95MISC",
"conll03-95loc": "<data_path>/conll03_ner/ner/95LOC",
"conll03-105misc": "<data_path>/conll03_ner/ner/105MISC",
"conll03-105loc": "<data_path>/conll03_ner/ner/105LOC",
"conll03-115misc": "<data_path>/conll03_ner/ner/115MISC",
"conll03-115loc": "<data_path>/conll03_ner/ner/115LOC",
"conll03-125misc": "<data_path>/conll03_ner/ner/125MISC",
"conll03-125loc": "<data_path>/conll03_ner/ner/125LOC",
"conll03-135misc": "<data_path>/conll03_ner/ner/135MISC",
"conll03-135loc": "<data_path>/conll03_ner/ner/135LOC",
"conll03-145misc": "<data_path>/conll03_ner/ner/145MISC",
"conll03-145loc": "<data_path>/conll03_ner/ner/145LOC",
"conll03-155misc": "<data_path>/conll03_ner/ner/155MISC",
"conll03-155loc": "<data_path>/conll03_ner/ner/155LOC",
"conll03-165misc": "<data_path>/conll03_ner/ner/165MISC",
"conll03-165loc": "<data_path>/conll03_ner/ner/165LOC",
"conll03-175misc": "<data_path>/conll03_ner/ner/175MISC",
"conll03-175loc": "<data_path>/conll03_ner/ner/175LOC",
"conll03-185misc": "<data_path>/conll03_ner/ner/185MISC",
"conll03-185loc": "<data_path>/conll03_ner/ner/185LOC",
"conll03-195misc": "<data_path>/conll03_ner/ner/195MISC",
"conll03-195loc": "<data_path>/conll03_ner/ner/195LOC",
"conll03-200misc": "<data_path>/conll03_ner/ner/200MISC",
"conll03-200loc": "<data_path>/conll03_ner/ner/200LOC",
"conll03-500misc": "<data_path>/conll03_ner/ner/500MISC",
"conll03-500loc": "<data_path>/conll03_ner/ner/500LOC",
"conll03-1000misc": "<data_path>/conll03_ner/ner/1000MISC",
"conll03-1000loc": "<data_path>/conll03_ner/ner/1000LOC",
"fce": "<data_path>/fce/tsv",
"w&i": "<data_path>/wi+locness/tsv",
"jnlpba": "<data_path>/JNLPBA/full",
"jnlpba-binary": "<data_path>/JNLPBA/full_binary",
"jnlpba-simp": "<data_path>/JNLPBA/simp",
"jnlpba-5cell_line": "<data_path>/JNLPBA/5cell_line",
"jnlpba-5cell_type": "<data_path>/JNLPBA/5cell_type",
"jnlpba-5rna": "<data_path>/JNLPBA/5RNA",
"jnlpba-10cell_line": "<data_path>/JNLPBA/10cell_line",
"jnlpba-10cell_type": "<data_path>/JNLPBA/10cell_type",
"jnlpba-10dna": "<data_path>/JNLPBA/10DNA",
"jnlpba-10protein": "<data_path>/JNLPBA/10protein",
"jnlpba-10rna": "<data_path>/JNLPBA/10RNA",
"jnlpba-25cell_line": "<data_path>/JNLPBA/25cell_line",
"jnlpba-25cell_type": "<data_path>/JNLPBA/25cell_type",
"jnlpba-25dna-1": "<data_path>/JNLPBA/25DNA_1",
"jnlpba-25dna-2": "<data_path>/JNLPBA/25DNA_2",
"jnlpba-25dna-3": "<data_path>/JNLPBA/25DNA_3",
"jnlpba-25dna-binary": "<data_path>/JNLPBA/25dna_binary",
"jnlpba-25dna-1-binary": "<data_path>/JNLPBA/25DNA_binary_1",
"jnlpba-25dna-2-binary": "<data_path>/JNLPBA/25DNA_binary_2",
"jnlpba-25dna-3-binary": "<data_path>/JNLPBA/25DNA_binary_3",
"jnlpba-25protein-1": "<data_path>/JNLPBA/25protein",
"jnlpba-25protein-2": "<data_path>/JNLPBA/25protein_1",
"jnlpba-25protein-3": "<data_path>/JNLPBA/25protein_2",
"jnlpba-25protein-binary": "<data_path>/JNLPBA/25protein_binary",
"jnlpba-25protein-1-binary": "<data_path>/JNLPBA/25protein_binary_1",
"jnlpba-25protein-2-binary": "<data_path>/JNLPBA/25protein_binary_2",
"jnlpba-25protein-3-binary": "<data_path>/JNLPBA/25protein_binary_3",
"jnlpba-25rna": "<data_path>/JNLPBA/25RNA",
"jnlpba-50cell_line": "<data_path>/JNLPBA/50cell_line",
"jnlpba-50cell_type": "<data_path>/JNLPBA/50cell_type",
"jnlpba-50dna": "<data_path>/JNLPBA/50DNA",
"jnlpba-50protein": "<data_path>/JNLPBA/50protein",
"jnlpba-50rna": "<data_path>/JNLPBA/50RNA",
"jnlpba-100cell_line": "<data_path>/JNLPBA/100cell_line",
"jnlpba-100cell_type": "<data_path>/JNLPBA/100cell_type",
"jnlpba-100dna": "<data_path>/JNLPBA/100DNA",
"jnlpba-100protein": "<data_path>/JNLPBA/100protein",
"jnlpba-100rna": "<data_path>/JNLPBA/100RNA",
"jnlpba-1000cell_line": "<data_path>/JNLPBA/1000cell_line",
"jnlpba-1000cell_type": "<data_path>/JNLPBA/1000cell_type",
"jnlpba-5dna": "<data_path>/JNLPBA/5DNA",
"jnlpba-5protein": "<data_path>/JNLPBA/5protein",
"jnlpba-15dna": "<data_path>/JNLPBA/15DNA",
"jnlpba-15protein": "<data_path>/JNLPBA/15protein",
"jnlpba-25dna": "<data_path>/JNLPBA/25DNA",
"jnlpba-25protein": "<data_path>/JNLPBA/25protein",
"jnlpba-35dna": "<data_path>/JNLPBA/35DNA",
"jnlpba-35protein": "<data_path>/JNLPBA/35protein",
"jnlpba-45dna": "<data_path>/JNLPBA/45DNA",
"jnlpba-45protein": "<data_path>/JNLPBA/45protein",
"jnlpba-55dna": "<data_path>/JNLPBA/55DNA",
"jnlpba-55protein": "<data_path>/JNLPBA/55protein",
"jnlpba-65dna": "<data_path>/JNLPBA/65DNA",
"jnlpba-65protein": "<data_path>/JNLPBA/65protein",
"jnlpba-75dna": "<data_path>/JNLPBA/75DNA",
"jnlpba-75protein": "<data_path>/JNLPBA/75protein",
"jnlpba-85dna": "<data_path>/JNLPBA/85DNA",
"jnlpba-85protein": "<data_path>/JNLPBA/85protein",
"jnlpba-95dna": "<data_path>/JNLPBA/95DNA",
"jnlpba-95protein": "<data_path>/JNLPBA/95protein",
"jnlpba-105dna": "<data_path>/JNLPBA/105DNA",
"jnlpba-105protein": "<data_path>/JNLPBA/105protein",
"jnlpba-115dna": "<data_path>/JNLPBA/115DNA",
"jnlpba-115protein": "<data_path>/JNLPBA/115protein",
"jnlpba-125dna": "<data_path>/JNLPBA/125DNA",
"jnlpba-125protein": "<data_path>/JNLPBA/125protein",
"jnlpba-135dna": "<data_path>/JNLPBA/135DNA",
"jnlpba-135protein": "<data_path>/JNLPBA/135protein",
"jnlpba-145dna": "<data_path>/JNLPBA/145DNA",
"jnlpba-145protein": "<data_path>/JNLPBA/145protein",
"jnlpba-155dna": "<data_path>/JNLPBA/155DNA",
"jnlpba-155protein": "<data_path>/JNLPBA/155protein",
"jnlpba-165dna": "<data_path>/JNLPBA/165DNA",
"jnlpba-165protein": "<data_path>/JNLPBA/165protein",
"jnlpba-175dna": "<data_path>/JNLPBA/175DNA",
"jnlpba-175protein": "<data_path>/JNLPBA/175protein",
"jnlpba-185dna": "<data_path>/JNLPBA/185DNA",
"jnlpba-185protein": "<data_path>/JNLPBA/185protein",
"jnlpba-195dna": "<data_path>/JNLPBA/195DNA",
"jnlpba-195protein": "<data_path>/JNLPBA/195protein",
"jnlpba-200dna": "<data_path>/JNLPBA/200DNA",
"jnlpba-200protein": "<data_path>/JNLPBA/200protein",
"jnlpba-500dna": "<data_path>/JNLPBA/500DNA",
"jnlpba-500protein": "<data_path>/JNLPBA/500protein",
"jnlpba-1000dna": "<data_path>/JNLPBA/1000DNA",
"jnlpba-1000protein": "<data_path>/JNLPBA/1000protein",
"bc2gm": "<data_path>/BC2GM/full",
"bc2gm-simp": "<data_path>/BC2GM/simp",
"bc4chemd": "<data_path>/BC4CHEMD/full",
"bc4chemd-simp": "<data_path>/BC4CHEMD/simp",
"mnli": "<data_path>/MNLI",
"hans": "<data_path>/HANS",
"wnut17": "<data_path>/WNUT17/full",
"mnist": None,
"mnist-1shot": None,
"cifar10": None,
"cifar10-1shot": None,
"cifar100": None,
"cifar100-1shot": None
}
def get_models():
return {
"BERT": BertTokenClassifier,
"BIOBERT": BertTokenClassifier,
"ROBERTA": RobertaTokenClassifier,
"DEBERTA": DebertaTokenClassifier,
}
def get_reporters():
return {
"ner": get_ner_metrics,
"ged": get_ged_metrics,
"nli": get_ir_metrics,
"ir": get_ir_metrics,
"wnut": get_wnut_metrics
}
def get_memories():
return {
"none": None,
}
def get_tokenizers():
return {
"DISTILBERT": DistilBertTokenizer,
"BERT": BertTokenizer,
"BIOBERT": BertTokenizer,
"ROBERTA": RobertaTokenizer,
"DEBERTA": DebertaTokenizer,
}
def get_configs():
return {
"DISTILBERT": DistilBertConfig,
"BERT": BertConfig,
"BIOBERT": BertConfig,
"ROBERTA": RobertaConfig,
"DEBERTA": DebertaV2Config,
}
def get_base_parameters_trainer():
return dict(
wandb=True,
data_dir=None,
model_name="bert-base-cased",
task_name="ged",
dataset_name="fce",
output_dir="./out/",
cache_dir="",
max_seq_length=50,
do_train=True,
do_eval=True,
eval_on="dev",
do_lower_case=False,
train_batch_size=64,
eval_batch_size=64,
learning_rate=1e-4,
num_train_epochs=4.0,
warmup_proportion=0.1,
weight_decay=0.01,
adam_epsilon=1e-8,
max_grad_norm=1.0,
no_cuda=False,
local_rank=-1,
seed=106,
gradient_accumulation_steps=1,
fp16=False,
fp16_opt_level="O1",
loss_scale=0,
server_ip="",
server_port="",
print_every=25,
n_gpu=1,
noise_addition=0.0
)