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Mingrui-Li1992 / SZ_methylation Public

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SZ_methylation

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2_sex_check.R

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10 lines (9 loc) · 304 Bytes

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SZ_methylation

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2_sex_check.R

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10 lines (9 loc) · 304 Bytes

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############################

########Step 2: sex check

###########################

sampleNames(rgSet)=rgSet[[1]]

mset<-preprocessRaw(rgSet)

GMSet<-mapToGenome(mset)

sex<-getSex(GMSet, cutoff = -2)

sex_out<-paste(RESULT_QC_DIR,"/sex_check_results.txt",sep="")

write.table(sex,sex_out,sep="\t")

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