-
Notifications
You must be signed in to change notification settings - Fork 1
/
gnrh_actcomps.g
110 lines (84 loc) · 3.13 KB
/
gnrh_actcomps.g
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
// genesis - gnrh compartment definitions
// Steve Van Hooser 9/98 (modified from Dieter Jaeger's gpkit)
// A. Tobin 2/01 (modified from D. Jaeger's gpkit)
// C. B. Roberts 8/04 (modified from above for gnrh neurons)
/*************************************************************
* Sets up passive membrane gnrh cell compartment prototypes
* Compartment types:
* soma dendrite synaptic contacts neurite neurax1,2,3 axon
*
***************************************************************/
function make_gnrh_comps
/* separate function so we can have local variables */
float len, dia, surf
int i
echo Making gnrh active compartment library...
/******************************SOMA*****************************/
len = 0.00e-6
dia = 20.0e-6
surf = dia*dia*{PI}
if (!({exists gnrh_soma}))
create compartment gnrh_soma
end
setfield gnrh_soma Cm {{CM}*surf} Ra {8.0*{RA}/(dia*{PI})} \
Em {ELEAK} initVm {EREST_ACT} Rm {{RMs}/surf} \
inject 0.0 dia {dia} len {len}
copy NaF_gnrh gnrh_soma/NaF
addmsg gnrh_soma gnrh_soma/NaF VOLTAGE Vm
addmsg gnrh_soma/NaF gnrh_soma CHANNEL Gk Ek
setfield gnrh_soma/NaF Gbar {{GNaFs}*surf}
copy Kdr_gnrh gnrh_soma/Kdr
addmsg gnrh_soma gnrh_soma/Kdr VOLTAGE Vm
addmsg gnrh_soma/Kdr gnrh_soma CHANNEL Gk Ek
setfield gnrh_soma/Kdr Gbar {{GKdrs}*surf}
copy CaL_gnrh gnrh_soma/CaL
addmsg gnrh_soma gnrh_soma/CaL VOLTAGE Vm
addmsg gnrh_soma/CaL gnrh_soma CHANNEL Gk Ek
setfield gnrh_soma/CaL Gbar {{GCaLs}*surf}
/***************************DENDRITE***************************/
len = 200.00e-6
dia = 2.00e-6
surf = len*dia*{PI}
if (!({exists gnrh_dendrite}))
create compartment gnrh_dendrite
end
setfield gnrh_dendrite Cm {{CM}*surf} Ra {4.0*{RA}*len/(dia*dia*{PI})} \
Em {ELEAK} initVm {EREST_ACT} Rm {{RMs}/surf} inject 0.0 \
dia {dia} len {len}
/*
copy NaF_gnrh gnrh_dendrite/NaF
addmsg gnrh_dendrite gnrh_dendrite/NaF VOLTAGE Vm
addmsg gnrh_dendrite/NaF gnrh_dendrite CHANNEL Gk Ek
setfield gnrh_dendrite/NaF Gbar {{GNaFd}*surf}
copy Kdr_gnrh gnrh_dendrite/Kdr
addmsg gnrh_dendrite gnrh_dendrite/Kdr VOLTAGE Vm
addmsg gnrh_dendrite/Kdr gnrh_dendrite CHANNEL Gk Ek
setfield gnrh_dendrite/Kdr Gbar {{GKdrd}*surf}
*/
/****************************AXON *****************************/
len = 200.00e-6
dia = 2.00e-6
surf = len*dia*{PI}
if (!({exists gnrh_axon}))
create compartment gnrh_axon
end
setfield gnrh_axon Cm {{CM}*surf} Ra {4.0*{RA}*len/(dia*dia*{PI})} \
Em {ELEAK} initVm {EREST_ACT} Rm {{RMs}/surf} inject 0.0 \
dia {dia} len {len}
copy NaF_gnrh gnrh_axon/NaF
addmsg gnrh_axon gnrh_axon/NaF VOLTAGE Vm
addmsg gnrh_axon/NaF gnrh_axon CHANNEL Gk Ek
setfield gnrh_axon/NaF Gbar {{GNaFa}*surf}
copy Kdr_gnrh gnrh_axon/Kdr
addmsg gnrh_axon gnrh_axon/Kdr VOLTAGE Vm
addmsg gnrh_axon/Kdr gnrh_axon CHANNEL Gk Ek
setfield gnrh_axon/Kdr Gbar {{GKdra}*surf}
copy CaL_gnrh gnrh_axon/CaL
addmsg gnrh_axon gnrh_axon/CaL VOLTAGE Vm
addmsg gnrh_axon/CaL gnrh_axon CHANNEL Gk Ek
setfield gnrh_axon/CaL Gbar {{GCaLa}*surf}
end
// actual code
pushe library
//make_gnrh_comps
pope