/
config_model_stim.py
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/
config_model_stim.py
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#!/usr/bin/env python
"""config-file for model_stim.py, which creates Figures 1B-E"""
# _title_ : config_model_stim.py
# _author_ : Katharina Anna Wilmes
# _mail_ : katha __at__ bccn-berlin.de
# --Imports--
import os
import gc
import sys
import pickle
import h5py
from time import time
import numpy as np
import datetime
sys.path.append("/home/wilmes/wilmes/scripts/project/model/lib/python2.6/site-packages/")
from NeuroTools.parameters import Parameter, ParameterSet, ParameterSpace, ParameterRange
#from snep.utils import Parameter, ParameterArray
#from snep.experiment import Experiment
"""
param_ranges = {
'Input':
{
'freq': ParameterArray([10]),
'wee':ParameterArray([0.008]),
'wee_strong':ParameterArray([0.014]),
},
'Synapse':
{
'scen': ParameterArray([1,2,3,4]),
},
'cell':
{
'git2' : ParameterArray([0.005]),
'gbar_kca' : ParameterArray([2.5]),
}
}
"""
params = {
'visual': 'figure',
'results_file': 'pairingscenarios',
'Input':
{
'freq': Parameter(40),
'wee':Parameter(0.008),
'wee_strong':Parameter(0.014),
},
'Synapse':
{
'shunt_reversal':Parameter(-73),
'pos': Parameter(3),
'shunt_pos': Parameter(1),
'shunt_tau':Parameter(5),
'basal_shunt_delay':Parameter(-4),
'shunt_delay':Parameter(-4), #-4
'distal_weight':Parameter(0.00001), #0.01
'oblique_weight':Parameter(0.00001),
'basal_weight':Parameter(0.00001),
'distal_shunt_weight':Parameter(0.01),
'proximal_shunt_weight':Parameter(0.04),
'basal_shunt_weight':Parameter(0.04),
'syn_type':'additive'
},
'STDP':
{
'delta_t': Parameter(-5,'ms'),
'thresh' : Parameter(-30, 'mV'),
'ca_thresh' : Parameter(0.5, 'mM')
},
'cell':
{
'gsca' : Parameter(1.5),
'git2' : Parameter(0.005),
'gbar_kca' : Parameter(2.5),
},
'sim':
{
'duration' : Parameter(1,'second'),
'v_init': Parameter(-70,'mV'),
'dt': Parameter(0.1,'ms'),
'sim_time':Parameter(100,'ms'),
'celsius': Parameter(30,'C'),
'high_res': True,
'theta':Parameter(1,'1/ms')
},
'plot':
{
'version':Parameter(1),
'path': os.path.expanduser("/scratch/kwilmes/Project1")
}
}