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anatGetAll(method="means") fails on some MINC input files #4

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mcvaneede opened this issue Sep 12, 2013 · 2 comments
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anatGetAll(method="means") fails on some MINC input files #4

mcvaneede opened this issue Sep 12, 2013 · 2 comments

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@mcvaneede
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The problem seems to come from the program compute_values_across_segmentation:

atlas = volumeFromFile(args[1], dtype="ushort")

did not work for the Allen Brain atlas file.
@mcvaneede
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a little follow-up: the code for compute_values_across_segmentation currently loads the atlas as a "ubyte" file, only allowing for 255 values. The atlases that we currently use have more values, so this needs to be fixed.

Mostly an issue (bug) for minc-stuffs...

@mcvaneede mcvaneede mentioned this issue Feb 22, 2016
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@cfhammill
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This is fixed by new c++ implementation of compute_values_across_segmentation used in anatGetAll2 in develop

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@mcvaneede @cfhammill