Getting variance from principal component

[markagrios]

Hi!

I'm trying to use the output from kilosort2 to generate some graphs for a grant and I want to plot the cumulative variance captured versus principle component number. I understand that each principal component explains some percentage of the data but I don't know where that information is stored or how I can generate it from the kilosort2 output. Any help would be appreciated, thanks!!

[marius10p]

You mean the variance explained in the waveform, like figure 2 here ?

[marius10p]

Issue has become inactive. Closing.