cellpose is an anatomical segmentation algorithm written in Python 3 by Carsen Stringer and Marius Pachitariu. For support, please open an issue.
We make pip installable releases of cellpose, here is the pypi. You can install it as pip install cellpose[gui].
You can try it out without installing at cellpose.org. Also check out these resources:
Cellpose 2.0
Cellpose 1.0
- paper on biorxiv (see figure 1 below) and in nature methods
- twitter thread
- Marius's talk
installation gui inputs settings outputs models train
notebook command
api