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Trouble installing inStrain with Conda #127

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alipirani88 opened this issue Jan 6, 2023 · 2 comments
Closed

Trouble installing inStrain with Conda #127

alipirani88 opened this issue Jan 6, 2023 · 2 comments

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@alipirani88
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Hi,

I am running inStrain as a part of a snakemake workflow. inStrain is used/installed via conda before the execution. The installation works without any error but inStrain throws this error while execution -

from numba.np.ufunc import _internal
SystemError: initialization of _internal failed without raising an exception

Has something changed recently that might be causing this issue?
@MrOlm
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MrOlm commented Jan 6, 2023

Nothing has changed with inStrain, but it seems like something might have changed with numba / numpy. To fix this, if possible, try and include numpy==1.21 in your inStrain conda installation command. And please let me know if this fixes the problem!

Thanks,
Matt

@alipirani88
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This fixed the issue. Thanks,

@MrOlm MrOlm closed this as completed Jan 31, 2023
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@alipirani88 @MrOlm