Analyse subsequence of genome

[FriederikeBiermann]

Hi
I'd like to inquire if bgcflow allows for the analysis of a specific region within a contig. For instance, I'm interested in examining the sequence NT_187580.1, spanning positions 169942 to 188315. Is this feasible using only the symples.csv file, or is it necessary to download all the corresponding snippets as FASTA files from NCBI and incorporate them into the CSV as custom entries?

I appreciate your assistance!

Best regards,
Frida

[matinnuhamunada]

Hi Frida, thanks for the inquiries :)

I think this request is too specific to be incorporated in the current workflow.
For now, I would go with your second suggestion, where you download the corresponding snippets as fasta file (.fna), then use the custom input type in the samples.csv.

I will put this in the wish list of feature to be added in future release, something similar to antismash --start and --end option.

[FriederikeBiermann]

Thank you :)