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This appears to be an issue with resizing the scale limits inside contourf. This makes sense, because the only difference between the contourf calls in a regular spatial plot and the diff spatial plot is that most of the values are near to zero in a diff plot. The simplest solution, suggested elsewhere online (https://groups.google.com/forum/#!topic/scitools-iris/kuO2cnafrF0), is simply to use pcolormesh instead (issue #53).
Get a python profiler running to check this
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