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OSTIElinkServiceTest.java
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/
OSTIElinkServiceTest.java
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/**
* This work was created by the National Center for Ecological Analysis and Synthesis
* at the University of California Santa Barbara (UCSB).
*
* Copyright 2021 Regents of the University of California
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package edu.ucsb.nceas.osti_elink;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import org.junit.Before;
import org.junit.Test;
import org.junit.Ignore;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
import java.io.InputStream;
import java.io.InputStreamReader;
import java.io.Reader;
import java.nio.charset.Charset;
import java.nio.charset.StandardCharsets;
import java.util.Properties;
/**
* Test the OSTIElinkService class
* @author tao
*
*/
public class OSTIElinkServiceTest {
private static OSTIElinkService ostiService = null;
private static String username = "";
private static String password = "";
public static final String BASEURL = "https://www.osti.gov/elinktest/2416api";
protected static Log log = LogFactory.getLog(OSTIElinkServiceTest.class);
@Before
public void setUp() throws Exception {
try (InputStream is = getClass().getClassLoader().getResourceAsStream("test.properties")) {
Properties prop = new Properties();
prop.load(is);
username = prop.getProperty("username");
password = prop.getProperty("password");
//System.out.println("the user name is " + username + " and password is " + password);
}
ostiService = new OSTIElinkService(username, password, BASEURL);
}
/**
* Test the buildMinimalMetadata method
* @throws Exception
*/
@Test
public void testBuildMinimalMetadata() throws Exception {
String result = ostiService.buildMinimalMetadata("KNB");
assertTrue(result.contains("<set_reserved/>"));
assertTrue(result.contains("<site_input_code>KNB</site_input_code>"));
//The default one will be ess-dive
result = ostiService.buildMinimalMetadata(null);
assertTrue(result.contains("<set_reserved/>"));
assertTrue(result.contains("<site_input_code>ESS-DIVE</site_input_code>"));
result = ostiService.buildMinimalMetadata("ESS-DIVE");
assertTrue(result.contains("<set_reserved/>"));
assertTrue(result.contains("<site_input_code>ESS-DIVE</site_input_code>"));
result = ostiService.buildMinimalMetadata("KNB");
assertTrue(result.contains("<set_reserved/>"));
assertTrue(result.contains("<site_input_code>KNB</site_input_code>"));
}
/**
* Test the mintIdentifier method
* @throws Exception
*/
@Test
public void testMintIdentifier() throws Exception {
String identifier = ostiService.mintIdentifier(null);
assertTrue(identifier.startsWith("doi:10."));
identifier = ostiService.removeDOI(identifier);
String metadata = ostiService.getMetadata(identifier);
assertTrue(metadata.contains(identifier));
try {
identifier = ostiService.mintIdentifier("KNB");
fail("The test can't get here");
} catch (Exception e) {
assertTrue(e instanceof OSTIElinkException);
}
}
/**
* Test the getMetadata method
* @throws Exception
*/
@Test
public void testGetMetadata() throws Exception {
String doi = "10.15485/1523924";
String metadata = ostiService.getMetadata(doi);
assertTrue(metadata.contains(doi));
String doiWithPrefix = "doi:" + doi;
metadata = ostiService.getMetadata(doiWithPrefix);
assertTrue(metadata.contains(doi));
try {
String doi2 = "11.15df485/1523924";
metadata = ostiService.getMetadata(doi2);
fail("The test can't get here");
} catch (Exception e) {
//e.printStackTrace();
assertTrue(e instanceof OSTIElinkNotFoundException);
}
try {
String doi3 = "doi";
metadata = ostiService.getMetadata(doi3);
fail("The test can't get here");
} catch (Exception e) {
//e.printStackTrace();
assertTrue(e instanceof OSTIElinkNotFoundException);
}
try {
String doi4 = "doi:";
metadata = ostiService.getMetadata(doi4);
fail("The test can't get here");
} catch (Exception e) {
//e.printStackTrace();
assertTrue(e instanceof OSTIElinkNotFoundException);
}
try {
String doi5 = "doi:11.15df485/1523924";
metadata = ostiService.getMetadata(doi5);
fail("The test can't get here");
} catch (Exception e) {
//e.printStackTrace();
assertTrue(e instanceof OSTIElinkNotFoundException);
}
try {
String doi6 = "1523924";
metadata = ostiService.getMetadata(doi6);
fail("The test can't get here");
} catch (Exception e) {
//e.printStackTrace();
assertTrue(e instanceof OSTIElinkNotFoundException);
}
}
/**
* Test the getMetadataFromOstiId method
* @throws Exception
*/
@Test
public void testGetMetadataFromOstiId() throws Exception {
String ostiId = "1523924";
String metadata = ostiService.getMetadataFromOstiId(ostiId);
assertTrue(metadata.contains(ostiId));
try {
String ostiId2 = "15df4851523924";
metadata = ostiService.getMetadataFromOstiId(ostiId2);
fail("The test can't get here");
} catch (Exception e) {
//e.printStackTrace();
assertTrue(e instanceof OSTIElinkNotFoundException);
}
try {
String doi5 = "doi:11.15df485/1523924";
metadata = ostiService.getMetadataFromOstiId(doi5);
fail("The test can't get here");
} catch (Exception e) {
//e.printStackTrace();
assertTrue(e instanceof OSTIElinkNotFoundException);
}
try {
String doi5 = "10.15485/1523924";
metadata = ostiService.getMetadataFromOstiId(doi5);
fail("The test can't get here");
} catch (Exception e) {
//e.printStackTrace();
assertTrue(e instanceof OSTIElinkNotFoundException);
}
}
/**
* Test the getOstiId method
* @throws Exception
*/
@Test
public void testGetOstiId() throws Exception {
String prefix = "10.15485";
String doi = "10.15485/1523924";
String ostiId = ostiService.getOstiId(doi, prefix);
assertTrue(ostiId.equals("1523924"));
prefix = "10.15485";
doi = "doi:10.15485/1523924";
ostiId = ostiService.getOstiId(doi, prefix);
assertTrue(ostiId.equals("1523924"));
prefix = "10.15485/";
doi = "10.15485/1523924";
ostiId = ostiService.getOstiId(doi, prefix);
assertTrue(ostiId.equals("1523924"));
prefix = "10.15485/";
doi = "doi:10.15485/1523924";
ostiId = ostiService.getOstiId(doi, prefix);
assertTrue(ostiId.equals("1523924"));
prefix = "doi:10.15485";
doi = "10.15485/1523924";
ostiId = ostiService.getOstiId(doi, prefix);
assertTrue(ostiId.equals("1523924"));
prefix = "doi:10.15485";
doi = "doi:10.15485/1523924";
ostiId = ostiService.getOstiId(doi, prefix);
assertTrue(ostiId.equals("1523924"));
prefix = "doi:10.15485/";
doi = "10.15485/1523924";
ostiId = ostiService.getOstiId(doi, prefix);
assertTrue(ostiId.equals("1523924"));
prefix = "doi:10.15485/";
doi = "10.15485/1523924";
ostiId = ostiService.getOstiId(doi, prefix);
assertTrue(ostiId.equals("1523924"));
prefix = null;
doi = "10.15485/1523924";
ostiId = ostiService.getOstiId(doi, prefix);
assertTrue(ostiId.equals("1523924"));
doi = "doi:10.15485/1523924";
ostiId = ostiService.getOstiId(doi, prefix);
assertTrue(ostiId.equals("1523924"));
doi = "11.15df485/1523924";
try {
ostiId = ostiService.getOstiId(doi, prefix);
fail("The test can't get here");
} catch (Exception e) {
//e.printStackTrace();
assertTrue(e instanceof OSTIElinkNotFoundException);
}
doi = "doi:11.15df485/1523924";
try {
ostiId = ostiService.getOstiId(doi, prefix);
fail("The test can't get here");
} catch (Exception e) {
//e.printStackTrace();
assertTrue(e instanceof OSTIElinkNotFoundException);
}
prefix = "doi:10.15485/";
doi = "11.15df485/1523924";
try {
ostiId = ostiService.getOstiId(doi, prefix);
fail("The test can't get here");
} catch (Exception e) {
//e.printStackTrace();
assertTrue(e instanceof OSTIElinkNotFoundException);
}
doi = "doi:11.15df485/1523924";
try {
ostiId = ostiService.getOstiId(doi, prefix);
fail("The test can't get here");
} catch (Exception e) {
//e.printStackTrace();
assertTrue(e instanceof OSTIElinkNotFoundException);
}
prefix = "doi:11.15df485/";
doi = "11.15df485/1523924";
ostiId = ostiService.getOstiId(doi, prefix);
assertTrue(ostiId.equals("1523924"));
doi = "doi:11.15df485/1523924";
ostiId = ostiService.getOstiId(doi, prefix);
assertTrue(ostiId.equals("1523924"));
doi = "10.15485/1523924";
ostiId = ostiService.getOstiId(doi, prefix);
assertTrue(ostiId.equals("1523924"));
doi = "doi:10.15485/1523924";
ostiId = ostiService.getOstiId(doi, prefix);
assertTrue(ostiId.equals("1523924"));
}
/**
* Test the setMetadata method
* @throws Exception
*/
@Test
public void testSetMetadata() throws Exception {
String identifier = ostiService.mintIdentifier(null);
assertTrue(identifier.startsWith("doi:10."));
identifier = ostiService.removeDOI(identifier);
//System.out.println("the doi identifier is " + identifier);
String metadata = ostiService.getMetadata(identifier);
assertTrue(metadata.contains(identifier));
assertTrue(metadata.contains("<title>unknown</title>"));
try (InputStream is = getClass().getClassLoader().getResourceAsStream("test-files/input-two-osti-id.xml")) {
String newMetadata = toString(is);
//System.out.println("the new metadata is " + newMetadata);
try {
ostiService.setMetadata(identifier, null, newMetadata);
fail("Test can't reach here");
} catch (Exception e) {
//e.printStackTrace();
assertTrue(e instanceof OSTIElinkException);
}
metadata = ostiService.getMetadata(identifier);
assertTrue(metadata.contains(identifier));
assertTrue(metadata.contains("<title>unknown</title>"));
}
try (InputStream is = getClass().getClassLoader().getResourceAsStream("test-files/input-no-osti-id.xml")) {
String newMetadata = toString(is);
ostiService.setMetadata(identifier, null, newMetadata);
metadata = ostiService.getMetadata(identifier);
assertTrue(metadata.contains(identifier));
assertTrue(metadata.contains("<title>0 - Data from Raczka et al., Interactions between"));
}
try (InputStream is = getClass().getClassLoader().getResourceAsStream("test-files/input-one-osti-id.xml")) {
String newMetadata = toString(is);
ostiService.setMetadata(identifier, null, newMetadata);
metadata = ostiService.getMetadata(identifier);
assertTrue(metadata.contains(identifier));
assertTrue(metadata.contains("<title>1 - Data from Raczka et al., Interactions between"));
}
}
/**
* Read a input stream object to a string
* @param inputStream the source of input
* @return the string presentation of the input stream
* @throws Exception
*/
protected static String toString(InputStream inputStream) throws Exception {
int bufferSize = 1024;
char[] buffer = new char[bufferSize];
StringBuilder textBuilder = new StringBuilder();
try (Reader reader = new InputStreamReader(inputStream, Charset.forName(StandardCharsets.UTF_8.name()))) {
for (int numRead; (numRead = reader.read(buffer, 0, buffer.length)) > 0; ) {
textBuilder.append(buffer, 0, numRead);
}
}
return textBuilder.toString();
}
}