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10 Commits

00_WCGNA_dataformatting.R

00_WCGNA_dataformatting.R

 
 

01_WCGNA-networkConstr-auto.R

01_WCGNA-networkConstr-auto.R

 
 

02_WGCNA_ExportNetwork.R

02_WGCNA_ExportNetwork.R

 
 

ClusterProfileGraphs.R

ClusterProfileGraphs.R

 
 

README.md

README.md

 
 

fastqc.sh

fastqc.sh

 
 

hisat2.sh

hisat2.sh

 
 

run_ballgown_sack_pair.R

run_ballgown_sack_pair.R

 
 

run_stringtie_human_only.sh

run_stringtie_human_only.sh

 
 

sbatch-fastqc.sh

sbatch-fastqc.sh

 
 

sbatch-hisat2.sh

sbatch-hisat2.sh

 
 

sbatch_submitter_script.sh

sbatch_submitter_script.sh

 
 

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PTNA: PBMC Transcriptional Network Analysis

Code companion for "Fasting and refeeding activate novel transcriptional networks to differentially control effector CD4+ T cell responsiveness" manuscript

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