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[Augmentation] Enable record-level override of augmented metadata #113

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gtsueng opened this issue Oct 20, 2023 · 0 comments
Open

[Augmentation] Enable record-level override of augmented metadata #113

gtsueng opened this issue Oct 20, 2023 · 0 comments
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@gtsueng
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gtsueng commented Oct 20, 2023

Metadata augmented via NLP tools such as PubTator are bound to have context-dependent erroneous entries. For example, PERCH in one record may be some sort of technique that Pubtator will extract as a fish, and in another record PubTator will correctly extract perch as a fish.

The augmented metadata is currently stored in a SQLite database as a table relating terms and ontology ids. A table with record ids will be needed

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