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factory.py
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/
factory.py
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# ===============================================================================
# Copyright 2012 Jake Ross
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# ===============================================================================
# ============= enthought library imports =======================
from traits.api import Instance, Button, Bool, Property, DelegatesTo, List, Str
# ============= standard library imports ========================
# ============= local library imports ==========================
from pychron.dvc.dvc_irradiationable import DVCAble
from pychron.experiment.automated_run.cryo.factory import CryoAutomatedRunFactory
from pychron.experiment.automated_run.factory import AutomatedRunFactory
from pychron.experiment.automated_run.uv.factory import UVAutomatedRunFactory
from pychron.experiment.queue.experiment_queue import ExperimentQueue
from pychron.experiment.queue.factory import ExperimentQueueFactory
from pychron.experiment.undoer import ExperimentUndoer
from pychron.experiment.utilities.identifier import convert_extract_device
from pychron.lasers.laser_managers.ilaser_manager import ILaserManager
from pychron.pychron_constants import LINE_STR, CRYO, FUSIONS_UV
class ExperimentFactory(DVCAble):
run_factory = Instance(AutomatedRunFactory)
queue_factory = Instance(ExperimentQueueFactory)
undoer = Instance(ExperimentUndoer)
generate_queue_button = Button
edit_queue_config_button = Button
loading_manager = Instance('pychron.loading.loading_manager.LoadingManager')
simple_identifier_manager = Instance('pychron.entry.simple_identifier_manager.SimpleIdentifierManager')
add_button = Button('Add')
clear_button = Button('Clear')
save_button = Button('Save')
edit_mode_button = Button('Edit')
edit_enabled = DelegatesTo('run_factory')
auto_increment_id = Bool(False)
auto_increment_position = Bool(False)
queue = Instance(ExperimentQueue, ())
ok_add = Property(depends_on='mass_spectrometer, extract_device, labnumber, username, load_name')
labnumber = DelegatesTo('run_factory')
load_name = DelegatesTo('queue_factory')
username = DelegatesTo('queue_factory')
mass_spectrometer = DelegatesTo('queue_factory')
extract_device = DelegatesTo('queue_factory')
selected_positions = List
default_mass_spectrometer = Str
_load_persistence_flag = False
# ===========================================================================
# permisions
# ===========================================================================
# max_allowable_runs = Int(10000)
# can_edit_scripts = Bool(True)
# def __init__(self, *args, **kw):
# super(ExperimentFactory, self).__init__(auto_setup=False, *args, **kw)
def activate(self, load_persistence=True):
self._load_persistence_flag = load_persistence
self.queue_factory.activate(load_persistence)
self.run_factory.activate(load_persistence)
def destroy(self):
self.run_factory.deactivate()
self.queue_factory.deactivate()
def undo(self):
self.info('undo')
self.undoer.undo()
def sync_queue_meta(self):
self.debug('syncing queue meta')
eq = self.queue
qf = self.queue_factory
for a in ('username',
'mass_spectrometer', 'extract_device',
'email', 'use_email', 'use_group_email',
'load_name', 'tray',
'delay_after_blank', 'delay_between_analyses', 'delay_after_air',
'default_lighting',
'queue_conditionals_name',
'note'):
if not self._sync_queue_to_factory(eq, qf, a):
self._sync_factory_to_queue(eq, qf, a)
self.debug('run factory set mass spec {}'.format(self.mass_spectrometer))
self.run_factory.set_mass_spectrometer(self.mass_spectrometer)
def set_selected_runs(self, runs):
self.run_factory.set_selected_runs(runs)
def get_patterns(self):
return self._get_patterns(self.extract_device)
# ===============================================================================
# private
# ===============================================================================
def _sync_queue_to_factory(self, eq, qf, a):
v = getattr(eq, a)
if isinstance(v, str):
v = v.strip()
if v:
self.debug('sync queue to factory {}>>{}'.format(a, v))
setattr(qf, a, v)
return True
def _sync_factory_to_queue(self, eq, qf, a):
v = getattr(qf, a)
if isinstance(v, str):
v = v.strip()
if v:
self.debug('sync factory to queue {}>>{}'.format(a, v))
setattr(eq, a, v)
def _add_run(self, *args, **kw):
if not self.ok_add:
missing = []
if not bool(self.username):
missing.append('"Username"')
if self.mass_spectrometer in ('', 'Spectrometer', LINE_STR):
missing.append('"Spectrometer"')
if self.extract_device not in ('', 'Extact Device', LINE_STR):
if not bool(self.queue_factory.load_name):
missing.append('"Load"')
if self.run_factory.run_block in ('RunBlock', LINE_STR):
if not self.labnumber:
missing.append('"Identifier"')
f = 'a value'
if len(missing) > 1:
f = 'values'
self.warning_dialog('Please set {} for {}'.format(f, ','.join(missing)))
return
positions = [str(pi.positions[0]) for pi in self.selected_positions]
self.debug('add run positions= {}'.format(positions))
q = self.queue
rf = self.run_factory
new_runs, freq = rf.new_runs(q, positions=positions,
auto_increment_position=self.auto_increment_position,
auto_increment_id=self.auto_increment_id)
if new_runs:
aruns = q.automated_runs
if q.selected and q.selected[-1] in aruns:
idx = aruns.index(q.selected[-1])
else:
idx = len(aruns) - 1
runs = q.add_runs(new_runs, freq, is_run_block=rf.run_block_enabled)
self.undoer.push('add runs', runs)
idx += len(runs)
with rf.update_selected_ctx():
q.select_run_idx(idx)
q.changed = True
def _update_end_after(self, new):
if new:
for ai in self.queue.automated_runs:
ai.end_after = False
self.run_factory.set_end_after(new)
def _update_queue(self, name, new):
self.debug('update queue {}={}'.format(name, new))
if self.queue:
self.queue.trait_set(**{name: new})
self.queue.changed = True
if name == 'repository_identifier':
for a in self.queue.automated_runs:
a.repository_identifier = new
if name == 'mass_spectrometer':
self.mass_spectrometer = new
self.run_factory.set_mass_spectrometer(new)
elif name == 'extract_device':
self._set_extract_device(new)
if self.simple_identifier_manager:
self.simple_identifier_manager.factory = self.run_factory
self.run_factory.mode = 'simple'
self._auto_save()
def _auto_save(self):
self.queue.auto_save()
def _set_extract_device(self, ed):
self.debug('setting extract dev="{}" mass spec="{}"'.format(ed, self.mass_spectrometer))
self.run_factory = self._run_factory_factory()
if self.simple_identifier_manager:
self.simple_identifier_manager.factory = self.run_factory
self.run_factory.mode = 'simple'
self.run_factory.remote_patterns = patterns = self._get_patterns(ed)
self.run_factory.setup_files()
if self._load_persistence_flag:
self.run_factory.load()
if self.queue:
self.queue.set_extract_device(ed)
self.queue.username = self.username
self.queue.mass_spectrometer = self.mass_spectrometer
self.queue.patterns = patterns
def _get_patterns(self, ed):
ps = []
service_name = convert_extract_device(ed)
man = self.application.get_service(ILaserManager, 'name=="{}"'.format(service_name))
if man:
ps = man.get_pattern_names()
else:
self.debug('No remote patterns. {} ({}) not available'.format(ed, service_name))
return ps
# ===============================================================================
# handlers
# ===============================================================================
def _generate_queue_button_fired(self):
"""
:return:
"""
lm = self.loading_manager
if lm:
if self.load_name:
positions = lm.get_positions_for_load(self.load_name)
if positions:
runs = [self.run_factory.new_run_simple(*p) for p in positions]
self.queue.extend_runs(runs)
self.queue.changed = True
else:
self.warning_dialog('Please set a load')
else:
self.warning_dialog('Loading Plugin required to auto generate queues')
def _clear_button_fired(self):
self.queue.clear_frequency_runs()
def _add_button_fired(self):
"""
"""
self.debug('add run fired')
self._add_run()
def _edit_mode_button_fired(self):
self.run_factory.edit_mode = not self.run_factory.edit_mode
# @on_trait_change('run_factory.apply_stepheat')
def _apply_stepheat(self):
self.run_factory.do_apply_stepheat(self.queue)
def _queue_changed(self, new):
self.undoer.queue = new
def _dvc_changed(self):
self.queue_factory.dvc = self.dvc
self.run_factory.dvc = self.dvc
def _application_changed(self):
self.run_factory.application = self.application
self.queue_factory.application = self.application
sm = self.application.get_service('pychron.entry.simple_identifier_manager.SimpleIdentifierManager')
if sm is not None:
sm.factory = self.run_factory
sm.activated()
def _default_mass_spectrometer_changed(self):
self.debug('default mass spec changed "{}"'.format(self.default_mass_spectrometer))
self.run_factory.set_mass_spectrometer(self.default_mass_spectrometer)
self.queue_factory.mass_spectrometer = self.default_mass_spectrometer
self.mass_spectrometer = self.default_mass_spectrometer
# ===============================================================================
# property get/set
# ===============================================================================
def _get_ok_add(self):
"""
"""
uflag = bool(self.username)
msflag = self.mass_spectrometer not in ('', 'Spectrometer', LINE_STR)
lflag = True
if self.extract_device not in ('', 'Extract Device', LINE_STR):
lflag = bool(self.queue_factory.load_name)
ret = uflag and msflag and lflag
if self.run_factory.run_block in ('RunBlock', LINE_STR):
ret = ret and self.labnumber
return ret
# ===============================================================================
#
# ===============================================================================
def _run_factory_factory(self):
if self.extract_device == FUSIONS_UV:
klass = UVAutomatedRunFactory
elif self.extract_device == CRYO:
klass = CryoAutomatedRunFactory
else:
klass = AutomatedRunFactory
rf = klass(dvc=self.dvc,
application=self.application,
extract_device=self.extract_device,
mass_spectrometer=self.mass_spectrometer)
rf.on_trait_change(self._update_end_after, 'end_after')
rf.on_trait_change(self._auto_save, 'auto_save_needed')
rf.on_trait_change(self._apply_stepheat, 'apply_stepheat')
return rf
# ===============================================================================
# defaults
# ===============================================================================
def _simple_identifier_manager_default(self):
if self.application:
sm = self.application.get_service('pychron.entry.simple_identifier_manager.SimpleIdentifierManager')
if sm is not None:
sm.factory = self.run_factory
sm.activated()
return sm
def _undoer_default(self):
return ExperimentUndoer(run_factory=self.run_factory, queue=self.queue)
def _run_factory_default(self):
return self._run_factory_factory()
def _queue_factory_default(self):
eq = ExperimentQueueFactory(dvc=self.dvc, application=self.application)
eq.on_trait_change(self._update_queue, '''mass_spectrometer,
extract_device, delay_+, tray, username, load_name, note,
email, use_email, use_group_email,
queue_conditionals_name, repository_identifier''')
return eq
# ============= EOF =============================================
# def _gen_func(self, pd, ans):
# import time
#
# pd.max = 100
# self.debug('$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$ generate queue')
# auto_gen_config = self.auto_gen_config
#
# # gen = self._generate_runs_from_load()
# q = self.queue
# rf = self.run_factory
# rf.suppress_meta = True
#
# def add_special(ln):
# # tt = time.time()
# pd.change_message('Add special: {}'.format(ln))
# rf.special_labnumber = ln
# new_runs, _ = rf.new_runs(q)
# q.add_runs(new_runs, 0)
# # rf.special_labnumber = ''
# # print 'add special {}, {}'.format(ln, time.time()-tt)
#
# st = time.time()
# rb = auto_gen_config.end_run_block
# if rb and rb in rf.run_blocks:
# rf.run_block = auto_gen_config.end_run_block
# new_runs, _ = rf.new_runs(q)
# q.add_runs(new_runs, 0, is_run_block=False)
#
# for ln, tag in (('Air', 'air'),
# ('Cocktail', 'cocktail'),
# ('Blank Unknown', 'blank')):
#
# if getattr(auto_gen_config, 'start_{}'.format(tag)):
# add_special(ln)
#
# # for i, (labnumber, sample, position) in enumerate(gen()):
# for i, (labnumber, sample, position) in enumerate(ans):
# if i:
# for ln, tag in (('Blank Unknown', 'blank'),
# ('Air', 'air'),
# ('Cocktail', 'cocktail')):
# f = getattr(auto_gen_config, '{}_freq'.format(tag))
# if f and i % f == 0:
# add_special(ln)
#
# pd.change_message('Adding {}. Position: {}'.format(labnumber, position))
#
# # tt = time.time()
# rf.labnumber = labnumber
# rf.sample = sample
# # print 'set ln/sample {} {}'.format(labnumber, time.time()-tt)
#
# new_runs, _ = rf.new_runs(q, positions=position)
# # print 'new runs {} {}'.format(labnumber, time.time()-tt)
#
# q.add_runs(new_runs, 0, is_run_block=False)
# # print 'add runs {} {}'.format(labnumber, time.time()-tt)
#
# for ln, tag in (('Blank Unknown', 'blank'),
# ('Air', 'air'),
# ('Cocktail', 'cocktail')):
#
# if getattr(auto_gen_config, 'end_{}'.format(tag)):
# add_special(ln)
#
# rb = auto_gen_config.end_run_block
# if rb and rb in rf.run_blocks:
# rf.run_block = auto_gen_config.end_run_block
# new_runs, _ = rf.new_runs(q)
# q.add_runs(new_runs, 0, is_run_block=False)
#
# # print 'finished adding', time.time()-st
# q.changed = True
# rf.update_info_needed = True
# rf.suppress_meta = False
# print('totaltime', time.time() - st)
# pd.close()
# rf.labnumber = ''
# rf.sample = ''