R-CMD-check.yaml

# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
on:
  push:
    branches:
      - main
      - develop
  pull_request:
    branches:
      - main
      - develop

name: R-CMD-check

jobs:
  R-CMD-check:
    runs-on: ${{ matrix.config.os }}

    name: ${{ matrix.config.os }} (${{ matrix.config.r }})

    strategy:
      fail-fast: false
      matrix:
        config:
          - {os: windows-latest, r: '4.2'}
          #- {os: macOS-latest, r: '4.2'}
          - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
          - {os: ubuntu-20.04,   r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest", http-user-agent: "R/4.1.0 (ubuntu-20.04) R (4.1.0 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions" }

    env:
      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
      RSPM: ${{ matrix.config.rspm }}
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

    steps:
      - uses: actions/checkout@v2

      - uses: r-lib/actions/setup-r@v1
        with:
          r-version: ${{ matrix.config.r }}

      - uses: r-lib/actions/setup-pandoc@v1

      - name: Query dependencies
        run: |
          install.packages('remotes')
          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
        shell: Rscript {0}

      - name: Restore R package cache
        uses: actions/cache@v2
        with:
          path: ${{ env.R_LIBS_USER }}
          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-

      - name: Install system dependencies
        if: runner.os == 'Linux'
        run: |
          while read -r cmd
          do
            eval sudo $cmd
          done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')

      - name: Install omp
        if: runner.os == 'macOS'
        run: |
              brew install gfortran
              brew install llvm boost libomp
              LDFLAGS_cmd=$(brew info llvm | grep "export LDFLAGS=")
              LDFLAGS_path=$(echo $LDFLAGS_cmd | awk '{print $2}' | sed 's/"//g')
              eval $LDFLAGS_cmd
              llvm_path_tmp=$(brew info llvm | grep "echo 'export PATH")
              llvm_path=$(echo $llvm_path_tmp | awk '{print $3}'| sed 's/PATH="//' | sed 's/:.*//')
              mkdir ~/.R
              touch ~/.R/Makevars
              echo "CC=$llvm_path/clang" >> ~/.R/Makevars
              echo "CXX=$llvm_path/clang++" >> ~/.R/Makevars
              echo "CXX11=$llvm_path/clang++" >> ~/.R/Makevars
              echo "CXX14=$llvm_path/clang++" >> ~/.R/Makevars
              echo "CXX17=$llvm_path/clang++" >> ~/.R/Makevars
              echo "CXX1X=$llvm_path/clang++" >> ~/.R/Makevars
              echo "$LDFLAGS_path -o task -fopenmp" >> ~/.R/Makevars
              cat ~/.R/Makevars


      - name: Install dependencies
        run: |
          remotes::install_deps(dependencies = TRUE)
          remotes::install_cran("rcmdcheck")
          remotes::install_cran("devtools")
          remotes::install_cran("RcppParallel")
          remotes::install_cran("baggr")
          remotes::install_cran("grf")
          remotes::install_cran("BART")
        shell: Rscript {0}

      - name: Check
        env:
          _R_CHECK_CRAN_INCOMING_REMOTE_: false
        run: |
          options(crayon.enabled = TRUE)
          rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
        shell: Rscript {0}

      - name: Upload check results
        if: failure()
        uses: actions/upload-artifact@main
        with:
          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
          path: check

      - name: Test coverage
        run: covr::codecov()
        shell: Rscript {0}