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docker: Error response from daemon: failed to create shim task: OCI runtime create failed: runc create failed #230

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juliusHuelsmann opened this issue Dec 2, 2022 · 27 comments

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@juliusHuelsmann
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juliusHuelsmann commented Dec 2, 2022

1. Issue or feature description

I am trying to run the following

docker run --rm --gpus all nvidia/cuda:11.8.0-base-ubuntu22.04 nvidia-smi

But receive the following error

docker: Error response from daemon: failed to create shim task: OCI runtime create failed: runc create failed: unable to start container process: error during container init: error running hook #0: error running hook: exit status 1, stdout: , stderr: Auto-detected mode as 'legacy'
nvidia-container-cli: initialization error: driver rpc error: failed to process request: unknown.

I executed the command as root user, and received the same error.

The GPU seems to be in persistent mode, and I receive the expected output of nvidia-smi on the host system.

I saw this issue, but the solution seems to not apply to my situation.

2. Steps to reproduce the issue

  • set up docker
  • set up NVIDIA Container Toolkit and subsequently restart docker & system
docker run --rm --gpus all nvidia/cuda:11.8.0-base-ubuntu22.04 nvidia-smi

3. Additional information

Some nvidia-container information: `nvidia-container-cli -k -d /dev/tty info`
sudo nvidia-container-cli -k -d /dev/tty info
 
-- WARNING, the following logs are for debugging purposes only --
 
I1202 14:12:41.463214 110770 nvc.c:376] initializing library context (version=1.11.0, build=c8f267be0bac1c654d59ad4ea5df907141149977)
I1202 14:12:41.463236 110770 nvc.c:350] using root /
I1202 14:12:41.463238 110770 nvc.c:351] using ldcache /etc/ld.so.cache
I1202 14:12:41.463239 110770 nvc.c:352] using unprivileged user 65534:65534
I1202 14:12:41.463248 110770 nvc.c:393] attempting to load dxcore to see if we are running under Windows Subsystem for Linux (WSL)
I1202 14:12:41.463300 110770 nvc.c:395] dxcore initialization failed, continuing assuming a non-WSL environment
I1202 14:12:41.465106 110771 nvc.c:278] loading kernel module nvidia
I1202 14:12:41.465212 110771 nvc.c:282] running mknod for /dev/nvidiactl
I1202 14:12:41.465226 110771 nvc.c:286] running mknod for /dev/nvidia0
I1202 14:12:41.465236 110771 nvc.c:290] running mknod for all nvcaps in /dev/nvidia-caps
I1202 14:12:41.467687 110771 nvc.c:218] running mknod for /dev/nvidia-caps/nvidia-cap1 from /proc/driver/nvidia/capabilities/mig/config
I1202 14:12:41.467728 110771 nvc.c:218] running mknod for /dev/nvidia-caps/nvidia-cap2 from /proc/driver/nvidia/capabilities/mig/monitor
I1202 14:12:41.468449 110771 nvc.c:296] loading kernel module nvidia_uvm
I1202 14:12:41.468470 110771 nvc.c:300] running mknod for /dev/nvidia-uvm
I1202 14:12:41.468492 110771 nvc.c:305] loading kernel module nvidia_modeset
I1202 14:12:41.468531 110771 nvc.c:309] running mknod for /dev/nvidia-modeset
I1202 14:12:41.468738 110772 rpc.c:71] starting driver rpc service
I1202 14:12:41.469342 110770 rpc.c:135] driver rpc service terminated successfully
nvidia-container-cli: initialization error: driver rpc error: failed to process request
I1202 14:12:41.469366 110770 nvc.c:434] shutting down library context
Host system
uname -a
Linux xBlade 5.19.3-051903-generic #202208211442 SMP PREEMPT_DYNAMIC Sun Aug 21 14:54:49 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux
Driver information from `nvidia-smi -a`
 sudo nvidia-smi -a
 
==============NVSMI LOG==============
 
Timestamp                                 : Fri Dec  2 15:11:35 2022
Driver Version                            : 520.61.05
CUDA Version                              : 11.8
 
Attached GPUs                             : 1
GPU 00000000:01:00.0
    Product Name                          : NVIDIA GeForce RTX 3080 Ti Laptop GPU
    Product Brand                         : GeForce
    Product Architecture                  : Ampere
    Display Mode                          : Enabled
    Display Active                        : Enabled
    Persistence Mode                      : Enabled
    MIG Mode
        Current                           : N/A
        Pending                           : N/A
    Accounting Mode                       : Disabled
    Accounting Mode Buffer Size           : 4000
    Driver Model
        Current                           : N/A
        Pending                           : N/A
    Serial Number                         : N/A
    GPU UUID                              : GPU-1baab009-66ed-34af-66fd-a97d16f3a9ab
    Minor Number                          : 0
    VBIOS Version                         : 94.03.19.00.6F
    MultiGPU Board                        : No
    Board ID                              : 0x100
    GPU Part Number                       : N/A
    Module ID                             : 0
    Inforom Version
        Image Version                     : G001.0000.03.03
        OEM Object                        : 2.0
        ECC Object                        : N/A
        Power Management Object           : N/A
    GPU Operation Mode
        Current                           : N/A
        Pending                           : N/A
    GSP Firmware Version                  : N/A
    GPU Virtualization Mode
        Virtualization Mode               : None
        Host VGPU Mode                    : N/A
    IBMNPU
        Relaxed Ordering Mode             : N/A
    PCI
        Bus                               : 0x01
        Device                            : 0x00
        Domain                            : 0x0000
        Device Id                         : 0x246010DE
        Bus Id                            : 00000000:01:00.0
        Sub System Id                     : 0x201B1A58
        GPU Link Info
            PCIe Generation
                Max                       : 4
                Current                   : 2
            Link Width
                Max                       : 16x
                Current                   : 8x
        Bridge Chip
            Type                          : N/A
            Firmware                      : N/A
        Replays Since Reset               : 0
        Replay Number Rollovers           : 0
        Tx Throughput                     : 117000 KB/s
        Rx Throughput                     : 535000 KB/s
    Fan Speed                             : N/A
    Performance State                     : P5
    Clocks Throttle Reasons
        Idle                              : Active
        Applications Clocks Setting       : Not Active
        SW Power Cap                      : Not Active
        HW Slowdown                       : Not Active
            HW Thermal Slowdown           : Not Active
            HW Power Brake Slowdown       : Not Active
        Sync Boost                        : Not Active
        SW Thermal Slowdown               : Not Active
        Display Clock Setting             : Not Active
    FB Memory Usage
        Total                             : 16384 MiB
        Reserved                          : 258 MiB
        Used                              : 94 MiB
        Free                              : 16030 MiB
    BAR1 Memory Usage
        Total                             : 16384 MiB
        Used                              : 3 MiB
        Free                              : 16381 MiB
    Compute Mode                          : Default
    Utilization
        Gpu                               : 40 %
        Memory                            : 10 %
        Encoder                           : 0 %
        Decoder                           : 0 %
    Encoder Stats
        Active Sessions                   : 0
        Average FPS                       : 0
        Average Latency                   : 0
    FBC Stats
        Active Sessions                   : 0
        Average FPS                       : 0
        Average Latency                   : 0
    Ecc Mode
        Current                           : N/A
        Pending                           : N/A
    ECC Errors
        Volatile
            SRAM Correctable              : N/A
            SRAM Uncorrectable            : N/A
            DRAM Correctable              : N/A
            DRAM Uncorrectable            : N/A
        Aggregate
            SRAM Correctable              : N/A
            SRAM Uncorrectable            : N/A
            DRAM Correctable              : N/A
            DRAM Uncorrectable            : N/A
    Retired Pages
        Single Bit ECC                    : N/A
        Double Bit ECC                    : N/A
        Pending Page Blacklist            : N/A
    Remapped Rows                         : N/A
    Temperature
        GPU Current Temp                  : 47 C
        GPU Shutdown Temp                 : 99 C
        GPU Slowdown Temp                 : 96 C
        GPU Max Operating Temp            : 80 C
        GPU Target Temperature            : N/A
        Memory Current Temp               : N/A
        Memory Max Operating Temp         : N/A
    Power Readings
        Power Management                  : N/A
        Power Draw                        : 20.51 W
        Power Limit                       : N/A
        Default Power Limit               : N/A
        Enforced Power Limit              : N/A
        Min Power Limit                   : N/A
        Max Power Limit                   : N/A
    Clocks
        Graphics                          : 600 MHz
        SM                                : 600 MHz
        Memory                            : 810 MHz
        Video                             : 555 MHz
    Applications Clocks
        Graphics                          : N/A
        Memory                            : N/A
    Default Applications Clocks
        Graphics                          : N/A
        Memory                            : N/A
    Max Clocks
        Graphics                          : 2100 MHz
        SM                                : 2100 MHz
        Memory                            : 7001 MHz
        Video                             : 1950 MHz
    Max Customer Boost Clocks
        Graphics                          : N/A
    Clock Policy
        Auto Boost                        : N/A
        Auto Boost Default                : N/A
    Voltage
        Graphics                          : 643.750 mV
    Processes
        GPU instance ID                   : N/A
        Compute instance ID               : N/A
        Process ID                        : 12004
            Type                          : G
            Name                          : /usr/lib/xorg/Xorg
            Used GPU Memory               : 93 MiB

Docker version from `docker version`
docker version
Client: Docker Engine - Community
 Version:           20.10.21
 API version:       1.41
 Go version:        go1.18.7
 Git commit:        baeda1f
 Built:             Tue Oct 25 18:01:58 2022
 OS/Arch:           linux/amd64
 Context:           default
 Experimental:      true
 
Server: Docker Engine - Community
 Engine:
  Version:          20.10.21
  API version:      1.41 (minimum version 1.12)
  Go version:       go1.18.7
  Git commit:       3056208
  Built:            Tue Oct 25 17:59:49 2022
  OS/Arch:          linux/amd64
  Experimental:     false
 containerd:
  Version:          1.6.10
  GitCommit:        770bd0108c32f3fb5c73ae1264f7e503fe7b2661
 runc:
  Version:          1.1.4
  GitCommit:        v1.1.4-0-g5fd4c4d
 docker-init:
  Version:          0.19.0
  GitCommit:        de40ad0
NVIDIA packages version from `dpkg -l '*nvidia*'` _or_ `rpm -qa '*nvidia*'`
dpkg -l '*nvidia*
Desired=Unknown/Install/Remove/Purge/Hold
| Status=Not/Inst/Conf-files/Unpacked/halF-conf/Half-inst/trig-aWait/Trig-pend
|/ Err?=(none)/Reinst-required (Status,Err: uppercase=bad)
||/ Name                             Version            Architecture Description
+++-================================-==================-============-=========================================================
un  libgldispatch0-nvidia            <none>             <none>       (no description available)
ii  libnvidia-cfg1-520:amd64         520.61.05-0ubuntu1 amd64        NVIDIA binary OpenGL/GLX configuration library
un  libnvidia-cfg1-any               <none>             <none>       (no description available)
un  libnvidia-common                 <none>             <none>       (no description available)
ii  libnvidia-common-520             520.61.05-0ubuntu1 all          Shared files used by the NVIDIA libraries
ii  libnvidia-compute-520:amd64      520.61.05-0ubuntu1 amd64        NVIDIA libcompute package
ii  libnvidia-compute-520:i386       520.61.05-0ubuntu1 i386         NVIDIA libcompute package
ii  libnvidia-container-tools        1.11.0-1           amd64        NVIDIA container runtime library (command-line tools)
ii  libnvidia-container1:amd64       1.11.0-1           amd64        NVIDIA container runtime library
un  libnvidia-decode                 <none>             <none>       (no description available)
ii  libnvidia-decode-520:amd64       520.61.05-0ubuntu1 amd64        NVIDIA Video Decoding runtime libraries
ii  libnvidia-decode-520:i386        520.61.05-0ubuntu1 i386         NVIDIA Video Decoding runtime libraries
un  libnvidia-encode                 <none>             <none>       (no description available)
ii  libnvidia-encode-520:amd64       520.61.05-0ubuntu1 amd64        NVENC Video Encoding runtime library
ii  libnvidia-encode-520:i386        520.61.05-0ubuntu1 i386         NVENC Video Encoding runtime library
un  libnvidia-encode1                <none>             <none>       (no description available)
un  libnvidia-extra                  <none>             <none>       (no description available)
ii  libnvidia-extra-520:amd64        520.61.05-0ubuntu1 amd64        Extra libraries for the NVIDIA driver
un  libnvidia-fbc1                   <none>             <none>       (no description available)
ii  libnvidia-fbc1-520:amd64         520.61.05-0ubuntu1 amd64        NVIDIA OpenGL-based Framebuffer Capture runtime library
ii  libnvidia-fbc1-520:i386          520.61.05-0ubuntu1 i386         NVIDIA OpenGL-based Framebuffer Capture runtime library
un  libnvidia-gl                     <none>             <none>       (no description available)
ii  libnvidia-gl-520:amd64           520.61.05-0ubuntu1 amd64        NVIDIA OpenGL/GLX/EGL/GLES GLVND libraries and Vulkan ICD
ii  libnvidia-gl-520:i386            520.61.05-0ubuntu1 i386         NVIDIA OpenGL/GLX/EGL/GLES GLVND libraries and Vulkan ICD
un  libnvidia-ml1                    <none>             <none>       (no description available)
ii  linux-headers-5.15.0-1005-nvidia 5.15.0-1005.5      amd64        Linux kernel headers for version 5.15.0 on 64 bit x86 SMP
ii  linux-nvidia-headers-5.15.0-1005 5.15.0-1005.5      all          Header files related to Linux kernel version 5.15.0
un  nvidia-384                       <none>             <none>       (no description available)
un  nvidia-390                       <none>             <none>       (no description available)
un  nvidia-common                    <none>             <none>       (no description available)
ii  nvidia-compute-utils-520         520.61.05-0ubuntu1 amd64        NVIDIA compute utilities
un  nvidia-container-runtime         <none>             <none>       (no description available)
un  nvidia-container-runtime-hook    <none>             <none>       (no description available)
ii  nvidia-container-toolkit         1.11.0-1           amd64        NVIDIA Container toolkit
ii  nvidia-container-toolkit-base    1.11.0-1           amd64        NVIDIA Container Toolkit Base
ii  nvidia-dkms-520                  520.61.05-0ubuntu1 amd64        NVIDIA DKMS package
un  nvidia-dkms-kernel               <none>             <none>       (no description available)
un  nvidia-docker                    <none>             <none>       (no description available)
rc  nvidia-docker2                   2.11.0-1           all          nvidia-docker CLI wrapper
ii  nvidia-driver-520                520.61.05-0ubuntu1 amd64        NVIDIA driver metapackage
un  nvidia-driver-binary             <none>             <none>       (no description available)
un  nvidia-kernel-common             <none>             <none>       (no description available)
ii  nvidia-kernel-common-520         520.61.05-0ubuntu1 amd64        Shared files used with the kernel module
un  nvidia-kernel-open               <none>             <none>       (no description available)
un  nvidia-kernel-open-520           <none>             <none>       (no description available)
un  nvidia-kernel-source             <none>             <none>       (no description available)
ii  nvidia-kernel-source-520         520.61.05-0ubuntu1 amd64        NVIDIA kernel source package
un  nvidia-libopencl1-dev            <none>             <none>       (no description available)
ii  nvidia-modprobe                  520.61.05-0ubuntu1 amd64        Load the NVIDIA kernel driver and create device files
un  nvidia-opencl-icd                <none>             <none>       (no description available)
un  nvidia-persistenced              <none>             <none>       (no description available)
ii  nvidia-prime                     0.8.17.1           all          Tools to enable NVIDIA's Prime
ii  nvidia-settings                  520.61.05-0ubuntu1 amd64        Tool for configuring the NVIDIA graphics driver
un  nvidia-settings-binary           <none>             <none>       (no description available)
un  nvidia-smi                       <none>             <none>       (no description available)
un  nvidia-utils                     <none>             <none>       (no description available)
ii  nvidia-utils-520                 520.61.05-0ubuntu1 amd64        NVIDIA driver support binaries
ii  xserver-xorg-video-nvidia-520    520.61.05-0ubuntu1 amd64        NVIDIA binary Xorg driver
NVIDIA container library version from `nvidia-container-cli -V`
 nvidia-container-cli -V
cli-version: 1.11.0
lib-version: 1.11.0
build date: 2022-09-06T09:21+00:00
build revision: c8f267be0bac1c654d59ad4ea5df907141149977
build compiler: x86_64-linux-gnu-gcc-7 7.5.0
build platform: x86_64
build flags: -D_GNU_SOURCE -D_FORTIFY_SOURCE=2 -DNDEBUG -std=gnu11 -O2 -g -fdata-sections -ffunction-sections -fplan9-extensions -fstack-protector -fno-strict-aliasing -fvisibility=hidden -Wall -Wextra -Wcast-align -Wpointer-arith -Wmissing-prototypes -Wnonnull -Wwrite-strings -Wlogical-op -Wformat=2 -Wmissing-format-attribute -Winit-self -Wshadow -Wstrict-prototypes -Wunreachable-code -Wconversion -Wsign-conversion -Wno-unknown-warning-option -Wno-format-extra-args -Wno-gnu-alignof-expression -Wl,-zrelro -Wl,-znow -Wl,-zdefs -Wl,--gc-sections
NVIDIA container library logs

nvidia-container-toolkit log

-- WARNING, the following logs are for debugging purposes only --

I1202 13:57:57.972095 88932 nvc.c:376] initializing library context (version=1.11.0, build=c8f267be0bac1c654d59ad4ea5df907141149977)
I1202 13:57:57.972124 88932 nvc.c:350] using root /
I1202 13:57:57.972127 88932 nvc.c:351] using ldcache /etc/ld.so.cache
I1202 13:57:57.972131 88932 nvc.c:352] using unprivileged user 65534:65534
I1202 13:57:57.972143 88932 nvc.c:393] attempting to load dxcore to see if we are running under Windows Subsystem for Linux (WSL)
I1202 13:57:57.972200 88932 nvc.c:395] dxcore initialization failed, continuing assuming a non-WSL environment
I1202 13:57:57.973406 88938 nvc.c:278] loading kernel module nvidia
I1202 13:57:57.973541 88938 nvc.c:282] running mknod for /dev/nvidiactl
I1202 13:57:57.973562 88938 nvc.c:286] running mknod for /dev/nvidia0
I1202 13:57:57.973575 88938 nvc.c:290] running mknod for all nvcaps in /dev/nvidia-caps
I1202 13:57:57.977634 88938 nvc.c:218] running mknod for /dev/nvidia-caps/nvidia-cap1 from /proc/driver/nvidia/capabilities/mig/config
I1202 13:57:57.977714 88938 nvc.c:218] running mknod for /dev/nvidia-caps/nvidia-cap2 from /proc/driver/nvidia/capabilities/mig/monitor
I1202 13:57:57.979040 88938 nvc.c:296] loading kernel module nvidia_uvm
I1202 13:57:57.979072 88938 nvc.c:300] running mknod for /dev/nvidia-uvm
I1202 13:57:57.979108 88938 nvc.c:305] loading kernel module nvidia_modeset
I1202 13:57:57.979170 88938 nvc.c:309] running mknod for /dev/nvidia-modeset
I1202 13:57:57.979608 88940 rpc.c:71] starting driver rpc service
I1202 13:57:57.980340 88932 rpc.c:135] driver rpc service terminated successfully
I1202 13:57:57.980388 88932 nvc.c:434] shutting down library context
nvidia-smi output host machine

The following output is instant:

nvidia-smi
Fri Dec  2 15:04:50 2022
+-----------------------------------------------------------------------------+
| NVIDIA-SMI 520.61.05    Driver Version: 520.61.05    CUDA Version: 11.8     |
|-------------------------------+----------------------+----------------------+
| GPU  Name        Persistence-M| Bus-Id        Disp.A | Volatile Uncorr. ECC |
| Fan  Temp  Perf  Pwr:Usage/Cap|         Memory-Usage | GPU-Util  Compute M. |
|                               |                      |               MIG M. |
|===============================+======================+======================|
|   0  NVIDIA GeForce ...  Off  | 00000000:01:00.0  On |                  N/A |
| N/A   47C    P5    20W /  N/A |     94MiB / 16384MiB |     59%      Default |
|                               |                      |                  N/A |
+-------------------------------+----------------------+----------------------+
 
+-----------------------------------------------------------------------------+
| Processes:                                                                  |
|  GPU   GI   CI        PID   Type   Process name                  GPU Memory |
|        ID   ID                                                   Usage      |
|=============================================================================|
|    0   N/A  N/A     12004      G   /usr/lib/xorg/Xorg                 93MiB |
+-----------------------------------------------------------------------------+
Docker command, image and tag used docker run --rm --gpus all nvidia/cuda:11.8.0-base-ubuntu22.04 nvidia-smi

Thanks in advance for your time :)

@apk29
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apk29 commented Dec 4, 2022

chmod +x backend/docker/entrypoints/entrypoint.sh

@juliusHuelsmann
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Hi @apk29

Thanks for your response!

chmod +x backend/docker/entrypoints/entrypoint.sh

I did not find the file anywhere on my system. Is there supposed to be a default entrypoint.sh?
sudo find / -name entrypoint.sh does not yield any results.

@apk29
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apk29 commented Dec 5, 2022 via email

@apk29
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apk29 commented Dec 5, 2022 via email

@Samsonait
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Samsonait commented Dec 12, 2022

This seems similar, also runc issue
opencontainers/runc#3686

I fixed the issue by disabling SElinux, it was enabled by an update somehow.

@juliusHuelsmann
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juliusHuelsmann commented Dec 12, 2022

This seems similar, also runc issue opencontainers/runc#3686

I fixed the issue by disabling SElinux, it was enabled by an update somehow.

Hi Samsonait! Thanks for your message!
I think in my case it might be different problem, SELinux is disabled according to sestatus, and I think my issue only exists when attempting to run with --gpus all, as, f.i., docker run hello-world works for me.

@Sarabhian
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I am also same issue, recently I tried to install latest tensorflow gpu in my docker container but it gave me error as

 docker : Error response from daemon: failed to create shim task: OCI runtime create failed: runc create failed: unable to start container process: error during container init: error running hook #0: error running hook: exit status 1, stdout: , stderr: Auto-detected mode as 'legacy'
nvidia-container-cli: initialization error: load library failed: libnvidia-ml.so.1: cannot open shared object file: no such file or directory: unknown.

and I am unable to install tensorflow Image properly
can someone guide me with it.

@chingfeng2021
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same issue ...

@Mirandatz
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Same issue.

@OFlexan
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OFlexan commented Mar 4, 2023

Same issue

@flightxgf
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same issue

2 similar comments
@AttentiveNader
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same issue

@up_the_irons
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same issue

@Kuro2k
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Kuro2k commented Mar 22, 2023

I fix this by using with sudo command. I am using docker desktop in Ubuntu.

@YPenev
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YPenev commented Mar 22, 2023

Same issue

@YPenev
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YPenev commented Mar 22, 2023

In my case it was from Nvidia CUDA API mismatch. Test if "nvidia-smi" is working correctly. More info here. It was fixed with a restart of the machine.

@sergenti
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same issue

@Tomlap123
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How did you guys fix it? Half of my server is down because of this error?

@OFlexan
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OFlexan commented Apr 14, 2023

How did you guys fix it? Half of my server is down because of this error?

I can't check right now, but I think it had something to do with buildkit in the Docker settings.

@AttentiveNader
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How did you guys fix it? Half of my server is down because of this error?

for me it was something with the nvidia drivers I reinstalled them and it worked

@umaryasin33
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How did you guys fix it?

@ShunHattori
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Executing docker run with sudo is works for me to run nvidia-smi.

@umaryasin33
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I run docker with sudo all the time, didn't help

@ShunHattori
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I found information somewhere that running docker context use default will solve the problem. I can start containers without sudo anymore.

@levongh
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levongh commented Oct 19, 2023

I did tried everything, but it did not help me to run the container from the first attempt just changed the docker from snap install to apt install

@elezar elezar transferred this issue from NVIDIA/nvidia-docker Jan 22, 2024
@vatsimanos
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Same issue

@eskiiom
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eskiiom commented Feb 24, 2024

hello
I had the same issue and it was only due to the fact I had LXC nesting turned off.
I enabled it again, restarted the linux container and everything works fine now

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