0.2

UKB GWAS pipeline scripts written for Hail 0.2

These scripts were used to run the GWAS pipeline in Hail 0.2 for the UK Biobank biomarker measurements

Here is the order of script execution:

1. irnt.biomarkers.py

2. create_phenotype_summary.biomarkers.py

3. build_pipelines.biomarkers.py

4. create_ldsc_hm3_table.py

5. load_mfi_ht.py

6. run_regressions.biomarkers.py

7. load_results_matrix_table.biomarkers.py

8. export_results.biomarkers.py

9. export_ldsc_sumstats_biomarkers.py