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NML2_SingleCompHHCell.nml
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NML2_SingleCompHHCell.nml
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<?xml version="1.0" encoding="UTF-8"?>
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2beta4.xsd"
id="NML2_SingleCompHHCell">
<!-- Single compartment cell with HH channels -->
<!-- This is a "pure" NeuroML 2 file. It can be included in a LEMS file for use in a simulaton
by the LEMS interpreter, see LEMS_NML2_Ex5_DetCell.xml -->
<include href="NaConductance.channel.nml"/>
<include href="KConductance.channel.nml"/>
<include href="LeakConductance.channel.nml"/>
<cell id="hhcell">
<morphology id="morph1">
<segment id="0" name="soma">
<proximal x="0" y="0" z="0" diameter="17.841242"/> <!--Gives a convenient surface area of 1000.0 ?m�-->
<distal x="0" y="0" z="0" diameter="17.841242"/>
</segment>
<segmentGroup id="soma_group">
<member segment="0"/>
</segmentGroup>
</morphology>
<biophysicalProperties id="bioPhys1">
<membraneProperties>
<channelDensity id="leak" ionChannel="LeakConductance" condDensity="3.0 S_per_m2" erev="-54.3mV" ion="non_specific"/>
<channelDensity id="NaConductances" ionChannel="NaConductance" condDensity="120.0 mS_per_cm2" erev="50.0 mV" ion="na"/>
<channelDensity id="KConductances" ionChannel="KConductance" condDensity="360 S_per_m2" erev="-77mV" ion="k"/>
<spikeThresh value="-20mV"/>
<specificCapacitance value="1.0 uF_per_cm2"/>
<initMembPotential value="-65mV"/>
</membraneProperties>
<intracellularProperties>
<resistivity value="0.03 kohm_cm"/> <!-- Note: not used in single compartment simulations -->
</intracellularProperties>
</biophysicalProperties>
</cell>
<pulseGenerator id="pulseGen1" delay="100ms" duration="100ms" amplitude="0.08nA"/>
<network id="net1">
<population id="hhpop" component="hhcell" size="1"/>
<explicitInput target="hhpop[0]" input="pulseGen1"/>
</network>
</neuroml>