Courses (jupyter notebook) on Climate Modeling

[annefou]

• http://www.atmos.albany.edu/facstaff/brose/classes/ATM623_Spring2015/Notes/index.html
• https://nordicesmhub.github.io/GEO4962/

[annefou]

How to create Galaxy training.

[annefou]

• Generate a workflow in Galaxy and generate training material from it.
• See https://training.galaxyproject.org/training-material/topics/contributing/

[annefou]

Under development.

We have already added a set of Jupyter notebooks in the shared folder:

• https://climate.usegalaxy.eu/library/list#folders/F081c26646cd7623d
• https://climate.usegalaxy.eu/library/list#folders/F419a80df9c6f4e5e

[Shorla]

@annefou Hi, my name is Shola an outreach applicant. I am interested in this issue. I need help understanding it better. The materials needed to create the tutorial is available in juypter notebook, I just need to follow it to create a Tutorial?

[annefou]

Hi @Shorla Thanks for your interest. There is a tutorial (draft Pull Request) on how to use Climate CMIP data from Galaxy JupyterLab. It is nearly complete but this may be a good starting point for you (you could help to finalize it) galaxyproject/training-material#1883

What do you think?
Or maybe you have suggestions for a new tutorial?

[Shorla]

@annefou I went through the draft pull request. I could help finalize it. what do you suggest I do first to help me do that?

[annefou]

@Shorla Excellent! The first thing you can do is to go through the training material and try to do what has been written.

• Go through the existing material and note/comment on what you do not understand/is unclear
• Correct typos or other factual errors
• Fix the beginning of the tutorial:
  • Replace the Get data section by "Starting Galaxy Climate JupyterLab": for this, you can copy what is
    in https://training.galaxyproject.org/training-material/topics/climate/tutorials/fates-jupyterlab/tutorial.html
    Step-2: Opening up Climate JupyterLab. After Open the JupyterLab Tool: interactive_tool_jupyter_notebook by clicking here,
    add a new step for the creation of a history (copy what is in the current Get data section for the creation of a new history
    (remove import the files from zenodo, check datatypes, etc.). We only need to have a clean empty history when starting because
    when using Pangeo CMIP6 data, we stream data and do not upload them.
  • Add a new section (before Plot the snowfall for January between 1985 - 2014 from NorESM2-MM, where we will explore the
    Pangeo CMIP6 catalog (we can do something similar to http://gallery.pangeo.io/repos/pangeo-gallery/cmip6/intake_ESM_example.html) org/training-material/topics/climate/tutorials/fates-jupyterlab/tutorialhttp://gallery.pangeo.io/repos/pangeo-gallery/cmip6/basic_search_and_load.html
  • Add hands-on about the content of the catalog (ask about the name of variables, etc.)
• Remove what is not part of the tutorial (from It comes first a description of the step: some background and some theory.
  Some image can be added there to support the theory explanation: to # Conclusion.
• Add a conclusion about the tutorial.

Do not hesitate to ask questions. Thanks!

[Shorla]

Hi @annefou, I opened a pull request for changes made here: NordicESMhub/galaxy-training-material#13

I am a bit confused about the new section for exploring the Pangeo CMIP6 catalog to add. should I just add the link?

[Shorla]

Hi, I made adjustments but it was created in a new pull request.NordicESMhub/galaxy-training-material#15