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Add Kraken classification of reads/contigs #13

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hkaspersen opened this issue Mar 9, 2021 · 0 comments · May be fixed by #23
Open

Add Kraken classification of reads/contigs #13

hkaspersen opened this issue Mar 9, 2021 · 0 comments · May be fixed by #23
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enhancement New feature or request

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  • Identify contaminant species and report them
  • Remove human reads/contigs?
    -- seqtk subseq on list of accepted contigs
  • Remove other contaminants from the data?

https://github.com/DerrickWood/kraken2/wiki/Manual#classification
https://github.com/lh3/seqtk
@hkaspersen hkaspersen added the enhancement New feature or request label Mar 9, 2021
@hkaspersen hkaspersen self-assigned this Dec 28, 2023
@hkaspersen hkaspersen linked a pull request Dec 28, 2023 that will close this issue
Rewrite to version 1.0.0 #23
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Rewrite to version 1.0.0 NorwegianVeterinaryInstitute/Ellipsis
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