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Add a metadata field that links to annotations #2527

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cmungall opened this issue Feb 14, 2024 · 1 comment
Open

Add a metadata field that links to annotations #2527

cmungall opened this issue Feb 14, 2024 · 1 comment
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ontology metadata Issues related to ontology metadata

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@cmungall
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Here annotations refers to text mining corpora like CRAFT, biolark, as well as standard gene associations such as those curated by GOC/HPOA/Monarch.

We should make it easier for ontology users to navigate from an ontology to annotations

For text mining corpora in particular my experience has been that it's painful to navigate lots of implicit information about where to download the corpora, what version of subset of the ontology was used, what curation practice was used etc.

@nlharris nlharris added the ontology metadata Issues related to ontology metadata label Feb 14, 2024
@matentzn
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matentzn commented Feb 19, 2024

Something like this perhaps?

annotated_datasets:
   - id: hpoa
     url: http://purl.obolibrary.org/obo/hp/genes_to_phenotype.txt
     documentation: https://hpo.jax.org/app/data/annotations

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Labels
ontology metadata Issues related to ontology metadata
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