mash_sketch_fasta.rst

mash_sketch_fasta

Purpose

This component performs mash sketch for fasta input files.

Note

- MASH documentation can be found here.

Input/Output type

• Input type: fasta
• Output type: msh

Parameters

• kmerSize: Parameter to set the kmer size for hashing. Default: 21. Default: false.
• sketchSize: Parameter to set the number of hashes per sketch. Default: 1000.

Published results

None.

Published reports

None.

Default directives

• mashSketchFasta:

  • container: flowcraft/mash-patlas
  • version: 1.6.0-1