- Updated prepare_mpwR function - improvements for MaxQuant import: Precursor Intensities with 0 are excluded
- Updated prepare_mpwR function - improvements for DIA-NN import: Precursor.Quantity with 0 are excluded
- Updated prepare_mpwR function - improvements for DIA-NN import: new parameter added to filter specific PG.Q.Value and Q.Value; default for both at 1% (0.01)
- Added function load_experimental_design
- Added function write_experimental_design
- Added further user-friendly error messaging in prepare_mpwR
- Added further description in write_generic_template
- Added article "Output Explanations" to package website
- Added article "Use case - Round robin study" to package website
- Added article "Use case - Software comparison" to package website
- Added generic input option
- Added function to write template for generic input
- Added MQ pg default filter.
- Altered color palette for MC/DC stacked barplots.
- Altered column requirements for PD.
- Minor changes in vignettes.
- Fixed rounding issue in DC/MC percentage plots.
- Minor changes in some examples.
- Minor changes in vignettes.
- First release version.