Enable T201 ruff pre-commit checks

[arkid15r]

Currently we don't automatically enforce T201 checks. The fix would include the modified pyproject.toml (the easy part) and changes related to taking care of multiple cases of print statement in the current code base: most of them need to be replaced with proper logging instructions, some of them can be suppressed extend-per-file-ignores, e.g.

[tool.ruff.lint.extend-per-file-ignores]
"path/to/the/file.py" = ["T201"]