OBO Record Resolve Issues for Proteomic Standard Initiative (PSI) Controlled Vocabularies (CV)

[lnanderson]

Identified issues the "Proteomic Standard Initiative (PSI) Controlled Vocabularies (CV)" resolving at Ontobee. See below example and corresponding references.

PSI-MS CV Resolve Issue Example

• Issue Date: 2022-06-23T15:34:00Z
• Name: solariX (Bruker Daltonics Instrument Model)
• subClassof: Bruker Daltonics solarix series
• Label: solariX
• PrefixIRI: MS:1001548
• ID: http://purl.obolibrary.org/obo/MS_1001548

Supporting Records

1. BioPortal: https://bioportal.bioontology.org/ontologies/PEAO/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FMS_1001549#classPermalinkModal
2. OLS: https://www.ebi.ac.uk/ols/ontologies/ms/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FMS_1001549&lang=en&viewMode=All&siblings=false

Standard Vocabulary Parent Information

• PSI-MS CV WG Homepage: https://www.psidev.info/groups/controlled-vocabularies#wgCVs
• Import Source: http://purl.obolibrary.org/obo/ms.owl
• Latest Release: https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.owl
• Steward: psidev-ms-vocab@lists.sourceforge.net

Potential @HUPO-PSI Relative Source Related Issues

• Make versionIRIs resolvable HUPO-PSI/psi-ms-CV#131
• MS is not parseable due to broken UO import HUPO-PSI/psi-ms-CV#138

[lnanderson]

Issue continues to persist frequently.

[yongqunh]

Got it fixed now:
https://ontobee.org/ontology/MS

not sure about the cause.
https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/4.1.100/ms.owl
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