/
openbabel-taberror.patch
32 lines (29 loc) · 1.74 KB
/
openbabel-taberror.patch
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diff -up openbabel-openbabel-2-4-1/test/testpdbformat.py.taberror openbabel-openbabel-2-4-1/test/testpdbformat.py
--- openbabel-openbabel-2-4-1/test/testpdbformat.py.taberror 2016-10-10 17:56:17.000000000 +0200
+++ openbabel-openbabel-2-4-1/test/testpdbformat.py 2019-03-04 11:09:24.786801658 +0100
@@ -24,12 +24,12 @@ class TestPDBFormat(BaseTest):
def testInsertionCodes(self):
"""
- Testing a PDB entry with insertion codes to distinguish residues
- upon conversion to FASTA.
+ Testing a PDB entry with insertion codes to distinguish residues
+ upon conversion to FASTA.
"""
self.canFindExecutable("babel")
- self.entryPDBwithInsertioncodes="""ATOM 406 N VAL L 29 58.041 17.797 48.254 1.00 0.00 N
+ self.entryPDBwithInsertioncodes="""ATOM 406 N VAL L 29 58.041 17.797 48.254 1.00 0.00 N
ATOM 407 CA VAL L 29 57.124 18.088 47.170 1.00 0.00 C
ATOM 408 C VAL L 29 55.739 17.571 47.538 1.00 0.00 C
ATOM 409 O VAL L 29 55.535 16.362 47.550 1.00 0.00 O
@@ -100,9 +100,9 @@ ATOM 473 HE1 TYR L 32 48.512
ATOM 474 HE2 TYR L 32 48.145 19.172 44.648 1.00 0.00 H
ATOM 475 HH TYR L 32 46.462 17.658 44.280 1.00 0.00 H
"""
- output, error = run_exec(self.entryPDBwithInsertioncodes,
- "babel -ipdb -ofasta")
- self.assertEqual(output.rstrip().rsplit("\n",1)[1], "VSSSY")
+ output, error = run_exec(self.entryPDBwithInsertioncodes,
+ "babel -ipdb -ofasta")
+ self.assertEqual(output.rstrip().rsplit("\n",1)[1], "VSSSY")
if __name__ == "__main__":
testsuite = []