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BiochemModels.mos
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BiochemModels.mos
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//name: BioChem.Examples
//keyword: instantiating msl221
//status: correct
//
// instantiate example
//
loadFile("ContainerSimple.mo"); getErrorString();
instantiateModel(BioChem_Examples_CircadianOscillator_Container); getErrorString();
checkModel(BioChem_Examples_CircadianOscillator_Container); getErrorString();
clear();
loadFile("extra_cellularTotal.mo"); getErrorString();
instantiateModel(BioChem_Examples_centralMetabolism_extra_cellular); getErrorString();
checkModel(BioChem_Examples_centralMetabolism_extra_cellular); getErrorString();
clear();
loadFile("ContainerTotal.mo"); getErrorString();
instantiateModel(BioChem_Examples_CircadianOscillator_Container); getErrorString();
checkModel(BioChem_Examples_CircadianOscillator_Container); getErrorString();
clear();
loadFile("CytosolTotal.mo"); getErrorString();
instantiateModel(BioChem_Examples_CaOscillations_Cytosol); getErrorString();
checkModel(BioChem_Examples_CaOscillations_Cytosol); getErrorString();
clear();
loadModel(BioChem); getErrorString();
checkModel(BioChem.Examples.InsulinSignaling_Sedaghat); getErrorString();
checkModel(BioChem.Examples.Glycolysis); getErrorString();
checkModel(BioChem.Examples.EnzMM); getErrorString();
checkModel(BioChem.Examples.GMO.cell); getErrorString();
checkModel(BioChem.Examples.centralMetabolism);
checkModel(BioChem.Examples.centralMetabolism.cytosol); getErrorString();
checkModel(BioChem.Examples.CircadianOscillator.Container); getErrorString();
checkModel(BioChem.Examples.CircadianOscillator.Nucleus); getErrorString();
checkModel(BioChem.Examples.CircadianOscillator.Cytoplasm); getErrorString();
checkModel(BioChem.Examples.CellDivison.cell); getErrorString();
checkModel(BioChem.Examples.CaOscillations.Cytosol); getErrorString();
checkModel(BioChem.Examples.CaOscillations.Endoplasmic_Reticulum); getErrorString();
checkModel(BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel); getErrorString();
checkModel(BioChem.Examples.GlucoseInsulinModel.Utilities.Reactions.FlowReaction); getErrorString();
checkModel(BioChem.Examples.GlucoseInsulinModel.Utilities.Reactions.UtilizationReaction); getErrorString();
checkModel(BioChem.Examples.GlucoseInsulinModel.Utilities.Reactions.signaltosubstance); getErrorString();
checkModel(BioChem.Examples.GlucoseInsulinModel.Utilities.Reactions.U_ii_reaction); getErrorString();
checkModel(BioChem.Examples.GlucoseInsulinModel.Utilities.Reactions.ActivationReaction); getErrorString();
checkModel(BioChem.Examples.GlucoseInsulinModel.Utilities.Reactions.MM_insulin); getErrorString();
checkModel(BioChem.Examples.GlucoseInsulinModel.Utilities.Reactions.GlucoseUptakeReaction); getErrorString();
checkModel(BioChem.Examples.MassAction.UniUni); getErrorString();
checkModel(BioChem.Examples.MassAction.UniBi); getErrorString();
checkModel(BioChem.Examples.MultiCompartments.GlucoseMetabolism); getErrorString();
checkModel(BioChem.Examples.MultiCompartments.BigCompartmentReversible); getErrorString();
checkModel(BioChem.Examples.MultiCompartments.BigCompartmentIrreversible); getErrorString();
checkModel(BioChem.Examples.MultiCompartments.Utilities.TCA); getErrorString();
checkModel(BioChem.Examples.MultiCompartments.Utilities.SmallCompartment); getErrorString();
// Result:
// true
// ""
// "class BioChem_Examples_CircadianOscillator_Container
// Real V(quantity = \"Volume\", unit = \"l\", start = 1.0, stateSelect = StateSelect.prefer) \"Compartment volume\";
// Real nucleus.V(quantity = \"Volume\", unit = \"l\", start = 1.0, stateSelect = StateSelect.prefer) \"Compartment volume\";
// Real nucleus.Nucleus_V = nucleus.V \"Variable used to make the compartment volume accessible for inner components. Do not edit.\";
// Real nucleus.y3.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0, start = 1.1, stateSelect = StateSelect.prefer) \"Current concentration of substance (mM)\";
// Real nucleus.y3.rNet(quantity = \"Molar flow rate\", unit = \"mol/s\") \"Net flow rate of substance into the node\";
// Real nucleus.y3.n(quantity = \"AmountOfSubstance\", unit = \"mol\", min = 0.0, stateSelect = StateSelect.prefer) \"Number of moles of substance in pool (mol)\";
// Real nucleus.y3.n1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real nucleus.y3.n1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real nucleus.y3.n1.V(quantity = \"Volume\", unit = \"l\");
// Real nucleus.y6.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0, start = 1.0, stateSelect = StateSelect.prefer) \"Current concentration of substance (mM)\";
// Real nucleus.y6.rNet(quantity = \"Molar flow rate\", unit = \"mol/s\") \"Net flow rate of substance into the node\";
// Real nucleus.y6.n(quantity = \"AmountOfSubstance\", unit = \"mol\", min = 0.0, stateSelect = StateSelect.prefer) \"Number of moles of substance in pool (mol)\";
// Real nucleus.y6.n1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real nucleus.y6.n1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real nucleus.y6.n1.V(quantity = \"Volume\", unit = \"l\");
// Real nucleus.y7.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0, start = 1.05, stateSelect = StateSelect.prefer) \"Current concentration of substance (mM)\";
// Real nucleus.y7.rNet(quantity = \"Molar flow rate\", unit = \"mol/s\") \"Net flow rate of substance into the node\";
// Real nucleus.y7.n(quantity = \"AmountOfSubstance\", unit = \"mol\", min = 0.0, stateSelect = StateSelect.prefer) \"Number of moles of substance in pool (mol)\";
// Real nucleus.y7.n1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real nucleus.y7.n1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real nucleus.y7.n1.V(quantity = \"Volume\", unit = \"l\");
// Real nucleus.y3_node.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real nucleus.y3_node.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real nucleus.y3_node.V(quantity = \"Volume\", unit = \"l\");
// parameter Real nucleus.k3t = k3t;
// Real nucleus.y2_node.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real nucleus.y2_node.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real nucleus.y2_node.V(quantity = \"Volume\", unit = \"l\");
// Real nucleus.per2_cry_nuclear_export.rr(quantity = \"Reaction rate\", unit = \"mol/s\") \"Rate of the reaction\";
// Real nucleus.per2_cry_nuclear_export.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real nucleus.per2_cry_nuclear_export.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real nucleus.per2_cry_nuclear_export.s1.V(quantity = \"Volume\", unit = \"l\");
// Real nucleus.per2_cry_nuclear_export.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real nucleus.per2_cry_nuclear_export.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real nucleus.per2_cry_nuclear_export.p1.V(quantity = \"Volume\", unit = \"l\");
// Real nucleus.per2_cry_nuclear_export.nS1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the substrate\";
// Real nucleus.per2_cry_nuclear_export.nP1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the product\";
// parameter Real nucleus.per2_cry_nuclear_export.k3t = nucleus.k3t;
// Real nucleus.ambientSubstance.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0, stateSelect = StateSelect.prefer) \"Current concentration of substance (mM)\";
// Real nucleus.ambientSubstance.rNet(quantity = \"Molar flow rate\", unit = \"mol/s\") \"Net flow rate of substance into the node\";
// Real nucleus.ambientSubstance.n(quantity = \"AmountOfSubstance\", unit = \"mol\", min = 0.0, stateSelect = StateSelect.prefer) \"Number of moles of substance in pool (mol)\";
// Real nucleus.ambientSubstance.n1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real nucleus.ambientSubstance.n1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real nucleus.ambientSubstance.n1.V(quantity = \"Volume\", unit = \"l\");
// parameter Real nucleus.k3d = k3d;
// Real nucleus.nuclear_per2_cry_complex_degradation.rr(quantity = \"Reaction rate\", unit = \"mol/s\") \"Rate of the reaction\";
// Real nucleus.nuclear_per2_cry_complex_degradation.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real nucleus.nuclear_per2_cry_complex_degradation.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real nucleus.nuclear_per2_cry_complex_degradation.s1.V(quantity = \"Volume\", unit = \"l\");
// Real nucleus.nuclear_per2_cry_complex_degradation.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real nucleus.nuclear_per2_cry_complex_degradation.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real nucleus.nuclear_per2_cry_complex_degradation.p1.V(quantity = \"Volume\", unit = \"l\");
// Real nucleus.nuclear_per2_cry_complex_degradation.nS1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the substrate\";
// Real nucleus.nuclear_per2_cry_complex_degradation.nP1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the product\";
// parameter Real nucleus.nuclear_per2_cry_complex_degradation.k3d = nucleus.k3d;
// Real nucleus.y6_node.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real nucleus.y6_node.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real nucleus.y6_node.V(quantity = \"Volume\", unit = \"l\");
// parameter Real nucleus.k6t = k6t;
// Real nucleus.y5_node.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real nucleus.y5_node.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real nucleus.y5_node.V(quantity = \"Volume\", unit = \"l\");
// Real nucleus.BMAL1_nuclear_export.rr(quantity = \"Reaction rate\", unit = \"mol/s\") \"Rate of the reaction\";
// Real nucleus.BMAL1_nuclear_export.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real nucleus.BMAL1_nuclear_export.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real nucleus.BMAL1_nuclear_export.s1.V(quantity = \"Volume\", unit = \"l\");
// Real nucleus.BMAL1_nuclear_export.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real nucleus.BMAL1_nuclear_export.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real nucleus.BMAL1_nuclear_export.p1.V(quantity = \"Volume\", unit = \"l\");
// Real nucleus.BMAL1_nuclear_export.nS1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the substrate\";
// Real nucleus.BMAL1_nuclear_export.nP1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the product\";
// parameter Real nucleus.BMAL1_nuclear_export.k6t = nucleus.k6t;
// parameter Real nucleus.k6d = k6d;
// Real nucleus.nuclear_BMAL1_degradation.rr(quantity = \"Reaction rate\", unit = \"mol/s\") \"Rate of the reaction\";
// Real nucleus.nuclear_BMAL1_degradation.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real nucleus.nuclear_BMAL1_degradation.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real nucleus.nuclear_BMAL1_degradation.s1.V(quantity = \"Volume\", unit = \"l\");
// Real nucleus.nuclear_BMAL1_degradation.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real nucleus.nuclear_BMAL1_degradation.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real nucleus.nuclear_BMAL1_degradation.p1.V(quantity = \"Volume\", unit = \"l\");
// Real nucleus.nuclear_BMAL1_degradation.nS1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the substrate\";
// Real nucleus.nuclear_BMAL1_degradation.nP1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the product\";
// parameter Real nucleus.nuclear_BMAL1_degradation.k6d = nucleus.k6d;
// parameter Real nucleus.k6a = k6a;
// Real nucleus.BMAL1_activation.rr(quantity = \"Reaction rate\", unit = \"mol/s\") \"Rate of the reaction\";
// Real nucleus.BMAL1_activation.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real nucleus.BMAL1_activation.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real nucleus.BMAL1_activation.s1.V(quantity = \"Volume\", unit = \"l\");
// Real nucleus.BMAL1_activation.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real nucleus.BMAL1_activation.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real nucleus.BMAL1_activation.p1.V(quantity = \"Volume\", unit = \"l\");
// Real nucleus.BMAL1_activation.nS1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the substrate\";
// Real nucleus.BMAL1_activation.nP1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the product\";
// parameter Real nucleus.BMAL1_activation.k6a = nucleus.k6a;
// parameter Real nucleus.k7a = k7a;
// Real nucleus.BMAL1_deactivation.rr(quantity = \"Reaction rate\", unit = \"mol/s\") \"Rate of the reaction\";
// Real nucleus.BMAL1_deactivation.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real nucleus.BMAL1_deactivation.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real nucleus.BMAL1_deactivation.s1.V(quantity = \"Volume\", unit = \"l\");
// Real nucleus.BMAL1_deactivation.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real nucleus.BMAL1_deactivation.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real nucleus.BMAL1_deactivation.p1.V(quantity = \"Volume\", unit = \"l\");
// Real nucleus.BMAL1_deactivation.nS1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the substrate\";
// Real nucleus.BMAL1_deactivation.nP1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the product\";
// parameter Real nucleus.BMAL1_deactivation.k7a = nucleus.k7a;
// parameter Real nucleus.k7d = k7d;
// Real nucleus.Active_BMAL1_degradation.rr(quantity = \"Reaction rate\", unit = \"mol/s\") \"Rate of the reaction\";
// Real nucleus.Active_BMAL1_degradation.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real nucleus.Active_BMAL1_degradation.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real nucleus.Active_BMAL1_degradation.s1.V(quantity = \"Volume\", unit = \"l\");
// Real nucleus.Active_BMAL1_degradation.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real nucleus.Active_BMAL1_degradation.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real nucleus.Active_BMAL1_degradation.p1.V(quantity = \"Volume\", unit = \"l\");
// Real nucleus.Active_BMAL1_degradation.nS1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the substrate\";
// Real nucleus.Active_BMAL1_degradation.nP1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the product\";
// parameter Real nucleus.Active_BMAL1_degradation.k7d = nucleus.k7d;
// Real cytoplasm.V(quantity = \"Volume\", unit = \"l\", start = 1.0, stateSelect = StateSelect.prefer) \"Compartment volume\";
// Real cytoplasm.Cytoplasm_V = cytoplasm.V \"Variable used to make the compartment volume accessible for inner components. Do not edit.\";
// Real cytoplasm.y1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0, start = 0.2, stateSelect = StateSelect.prefer) \"Current concentration of substance (mM)\";
// Real cytoplasm.y1.rNet(quantity = \"Molar flow rate\", unit = \"mol/s\") \"Net flow rate of substance into the node\";
// Real cytoplasm.y1.n(quantity = \"AmountOfSubstance\", unit = \"mol\", min = 0.0, stateSelect = StateSelect.prefer) \"Number of moles of substance in pool (mol)\";
// Real cytoplasm.y1.n1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.y1.n1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.y1.n1.V(quantity = \"Volume\", unit = \"l\");
// Real cytoplasm.y2.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0, start = 0.0, stateSelect = StateSelect.prefer) \"Current concentration of substance (mM)\";
// Real cytoplasm.y2.rNet(quantity = \"Molar flow rate\", unit = \"mol/s\") \"Net flow rate of substance into the node\";
// Real cytoplasm.y2.n(quantity = \"AmountOfSubstance\", unit = \"mol\", min = 0.0, stateSelect = StateSelect.prefer) \"Number of moles of substance in pool (mol)\";
// Real cytoplasm.y2.n1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.y2.n1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.y2.n1.V(quantity = \"Volume\", unit = \"l\");
// Real cytoplasm.y4.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0, start = 0.8, stateSelect = StateSelect.prefer) \"Current concentration of substance (mM)\";
// Real cytoplasm.y4.rNet(quantity = \"Molar flow rate\", unit = \"mol/s\") \"Net flow rate of substance into the node\";
// Real cytoplasm.y4.n(quantity = \"AmountOfSubstance\", unit = \"mol\", min = 0.0, stateSelect = StateSelect.prefer) \"Number of moles of substance in pool (mol)\";
// Real cytoplasm.y4.n1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.y4.n1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.y4.n1.V(quantity = \"Volume\", unit = \"l\");
// Real cytoplasm.y5.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0, start = 1.0, stateSelect = StateSelect.prefer) \"Current concentration of substance (mM)\";
// Real cytoplasm.y5.rNet(quantity = \"Molar flow rate\", unit = \"mol/s\") \"Net flow rate of substance into the node\";
// Real cytoplasm.y5.n(quantity = \"AmountOfSubstance\", unit = \"mol\", min = 0.0, stateSelect = StateSelect.prefer) \"Number of moles of substance in pool (mol)\";
// Real cytoplasm.y5.n1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.y5.n1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.y5.n1.V(quantity = \"Volume\", unit = \"l\");
// Real cytoplasm.ambientSubstance.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0, stateSelect = StateSelect.prefer) \"Current concentration of substance (mM)\";
// Real cytoplasm.ambientSubstance.rNet(quantity = \"Molar flow rate\", unit = \"mol/s\") \"Net flow rate of substance into the node\";
// Real cytoplasm.ambientSubstance.n(quantity = \"AmountOfSubstance\", unit = \"mol\", min = 0.0, stateSelect = StateSelect.prefer) \"Number of moles of substance in pool (mol)\";
// Real cytoplasm.ambientSubstance.n1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.ambientSubstance.n1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.ambientSubstance.n1.V(quantity = \"Volume\", unit = \"l\");
// Real cytoplasm.trans_per2_cry = trans_per2_cry;
// Real cytoplasm.per2_cry_transcription.rr(quantity = \"Reaction rate\", unit = \"mol/s\") \"Rate of the reaction\";
// Real cytoplasm.per2_cry_transcription.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.per2_cry_transcription.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.per2_cry_transcription.s1.V(quantity = \"Volume\", unit = \"l\");
// Real cytoplasm.per2_cry_transcription.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.per2_cry_transcription.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.per2_cry_transcription.p1.V(quantity = \"Volume\", unit = \"l\");
// Real cytoplasm.per2_cry_transcription.nS1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the substrate\";
// Real cytoplasm.per2_cry_transcription.nP1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the product\";
// Real cytoplasm.per2_cry_transcription.trans_per2_cry = cytoplasm.trans_per2_cry;
// parameter Real cytoplasm.k1d = k1d;
// Real cytoplasm.per2_cry_mRNA_degradation.rr(quantity = \"Reaction rate\", unit = \"mol/s\") \"Rate of the reaction\";
// Real cytoplasm.per2_cry_mRNA_degradation.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.per2_cry_mRNA_degradation.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.per2_cry_mRNA_degradation.s1.V(quantity = \"Volume\", unit = \"l\");
// Real cytoplasm.per2_cry_mRNA_degradation.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.per2_cry_mRNA_degradation.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.per2_cry_mRNA_degradation.p1.V(quantity = \"Volume\", unit = \"l\");
// Real cytoplasm.per2_cry_mRNA_degradation.nS1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the substrate\";
// Real cytoplasm.per2_cry_mRNA_degradation.nP1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the product\";
// parameter Real cytoplasm.per2_cry_mRNA_degradation.k1d = cytoplasm.k1d;
// parameter Real cytoplasm.k2b = k2b;
// parameter Real cytoplasm.q = q;
// Real cytoplasm.per2_cry_complex_formation.rr(quantity = \"Reaction rate\", unit = \"mol/s\") \"Rate of the reaction\";
// Real cytoplasm.per2_cry_complex_formation.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.per2_cry_complex_formation.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.per2_cry_complex_formation.s1.V(quantity = \"Volume\", unit = \"l\");
// Real cytoplasm.per2_cry_complex_formation.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.per2_cry_complex_formation.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.per2_cry_complex_formation.p1.V(quantity = \"Volume\", unit = \"l\");
// Real cytoplasm.per2_cry_complex_formation.nS1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the substrate\";
// Real cytoplasm.per2_cry_complex_formation.nP1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the product\";
// Real cytoplasm.per2_cry_complex_formation.m1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.per2_cry_complex_formation.m1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.per2_cry_complex_formation.m1.V(quantity = \"Volume\", unit = \"l\");
// parameter Real cytoplasm.per2_cry_complex_formation.k2b = cytoplasm.k2b;
// parameter Real cytoplasm.per2_cry_complex_formation.q = cytoplasm.q;
// parameter Real cytoplasm.k2d = k2d;
// Real cytoplasm.cytoplasmic_per2_cry_complex_degradation.rr(quantity = \"Reaction rate\", unit = \"mol/s\") \"Rate of the reaction\";
// Real cytoplasm.cytoplasmic_per2_cry_complex_degradation.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.cytoplasmic_per2_cry_complex_degradation.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.cytoplasmic_per2_cry_complex_degradation.s1.V(quantity = \"Volume\", unit = \"l\");
// Real cytoplasm.cytoplasmic_per2_cry_complex_degradation.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.cytoplasmic_per2_cry_complex_degradation.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.cytoplasmic_per2_cry_complex_degradation.p1.V(quantity = \"Volume\", unit = \"l\");
// Real cytoplasm.cytoplasmic_per2_cry_complex_degradation.nS1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the substrate\";
// Real cytoplasm.cytoplasmic_per2_cry_complex_degradation.nP1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the product\";
// parameter Real cytoplasm.cytoplasmic_per2_cry_complex_degradation.k2d = cytoplasm.k2d;
// parameter Real cytoplasm.k2t = k2t;
// Real cytoplasm.y3_node.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.y3_node.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.y3_node.V(quantity = \"Volume\", unit = \"l\");
// Real cytoplasm.per2_cry_nuclear_import.rr(quantity = \"Reaction rate\", unit = \"mol/s\") \"Rate of the reaction\";
// Real cytoplasm.per2_cry_nuclear_import.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.per2_cry_nuclear_import.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.per2_cry_nuclear_import.s1.V(quantity = \"Volume\", unit = \"l\");
// Real cytoplasm.per2_cry_nuclear_import.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.per2_cry_nuclear_import.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.per2_cry_nuclear_import.p1.V(quantity = \"Volume\", unit = \"l\");
// Real cytoplasm.per2_cry_nuclear_import.nS1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the substrate\";
// Real cytoplasm.per2_cry_nuclear_import.nP1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the product\";
// parameter Real cytoplasm.per2_cry_nuclear_import.k2t = cytoplasm.k2t;
// Real cytoplasm.y2_node.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.y2_node.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.y2_node.V(quantity = \"Volume\", unit = \"l\");
// Real cytoplasm.trans_Bmal1 = trans_Bmal1;
// Real cytoplasm.Bmal1_transcription.rr(quantity = \"Reaction rate\", unit = \"mol/s\") \"Rate of the reaction\";
// Real cytoplasm.Bmal1_transcription.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.Bmal1_transcription.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.Bmal1_transcription.s1.V(quantity = \"Volume\", unit = \"l\");
// Real cytoplasm.Bmal1_transcription.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.Bmal1_transcription.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.Bmal1_transcription.p1.V(quantity = \"Volume\", unit = \"l\");
// Real cytoplasm.Bmal1_transcription.nS1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the substrate\";
// Real cytoplasm.Bmal1_transcription.nP1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the product\";
// Real cytoplasm.Bmal1_transcription.trans_Bmal1 = cytoplasm.trans_Bmal1;
// parameter Real cytoplasm.k4d = k4d;
// Real cytoplasm.Bmal1_mRNA_degradation.rr(quantity = \"Reaction rate\", unit = \"mol/s\") \"Rate of the reaction\";
// Real cytoplasm.Bmal1_mRNA_degradation.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.Bmal1_mRNA_degradation.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.Bmal1_mRNA_degradation.s1.V(quantity = \"Volume\", unit = \"l\");
// Real cytoplasm.Bmal1_mRNA_degradation.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.Bmal1_mRNA_degradation.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.Bmal1_mRNA_degradation.p1.V(quantity = \"Volume\", unit = \"l\");
// Real cytoplasm.Bmal1_mRNA_degradation.nS1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the substrate\";
// Real cytoplasm.Bmal1_mRNA_degradation.nP1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the product\";
// parameter Real cytoplasm.Bmal1_mRNA_degradation.k4d = cytoplasm.k4d;
// parameter Real cytoplasm.k5b = k5b;
// Real cytoplasm.BMAL1_translation.rr(quantity = \"Reaction rate\", unit = \"mol/s\") \"Rate of the reaction\";
// Real cytoplasm.BMAL1_translation.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.BMAL1_translation.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.BMAL1_translation.s1.V(quantity = \"Volume\", unit = \"l\");
// Real cytoplasm.BMAL1_translation.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.BMAL1_translation.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.BMAL1_translation.p1.V(quantity = \"Volume\", unit = \"l\");
// Real cytoplasm.BMAL1_translation.nS1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the substrate\";
// Real cytoplasm.BMAL1_translation.nP1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the product\";
// Real cytoplasm.BMAL1_translation.m1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.BMAL1_translation.m1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.BMAL1_translation.m1.V(quantity = \"Volume\", unit = \"l\");
// parameter Real cytoplasm.BMAL1_translation.k5b = cytoplasm.k5b;
// parameter Real cytoplasm.k5d = k5d;
// Real cytoplasm.cytoplasmic_BMAL1_degradation.rr(quantity = \"Reaction rate\", unit = \"mol/s\") \"Rate of the reaction\";
// Real cytoplasm.cytoplasmic_BMAL1_degradation.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.cytoplasmic_BMAL1_degradation.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.cytoplasmic_BMAL1_degradation.s1.V(quantity = \"Volume\", unit = \"l\");
// Real cytoplasm.cytoplasmic_BMAL1_degradation.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.cytoplasmic_BMAL1_degradation.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.cytoplasmic_BMAL1_degradation.p1.V(quantity = \"Volume\", unit = \"l\");
// Real cytoplasm.cytoplasmic_BMAL1_degradation.nS1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the substrate\";
// Real cytoplasm.cytoplasmic_BMAL1_degradation.nP1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the product\";
// parameter Real cytoplasm.cytoplasmic_BMAL1_degradation.k5d = cytoplasm.k5d;
// parameter Real cytoplasm.k5t = k5t;
// Real cytoplasm.y6_node.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.y6_node.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.y6_node.V(quantity = \"Volume\", unit = \"l\");
// Real cytoplasm.BMAL1_nuclear_import.rr(quantity = \"Reaction rate\", unit = \"mol/s\") \"Rate of the reaction\";
// Real cytoplasm.BMAL1_nuclear_import.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.BMAL1_nuclear_import.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.BMAL1_nuclear_import.s1.V(quantity = \"Volume\", unit = \"l\");
// Real cytoplasm.BMAL1_nuclear_import.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.BMAL1_nuclear_import.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.BMAL1_nuclear_import.p1.V(quantity = \"Volume\", unit = \"l\");
// Real cytoplasm.BMAL1_nuclear_import.nS1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the substrate\";
// Real cytoplasm.BMAL1_nuclear_import.nP1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the product\";
// parameter Real cytoplasm.BMAL1_nuclear_import.k5t = cytoplasm.k5t;
// Real cytoplasm.y5_node.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytoplasm.y5_node.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytoplasm.y5_node.V(quantity = \"Volume\", unit = \"l\");
// Real Nucleus_V = nucleus.V \"Variable used to make the compartment volume of inner compartments accessible. Do not edit.\";
// Real Cytoplasm_V = cytoplasm.V \"Variable used to make the compartment volume of inner compartments accessible. Do not edit.\";
// Real Container_V = V \"Variable used to make the compartment volume accessible for inner components. Do not edit.\";
// Real trans_per2_cry(start = 0.0);
// parameter Real v1b = 9.0;
// parameter Real c_sbml = 0.01;
// parameter Real k1b = 1.0;
// parameter Real k1i = 0.5600000000000001;
// parameter Real hill_coeff = 8.0;
// Real trans_Bmal1(start = 0.0);
// parameter Real v4b = 3.6;
// parameter Real r_sbml = 3.0;
// parameter Real k4b = 2.16;
// Real y5_y6_y7(start = 3.05);
// parameter Real k1d = 0.12;
// parameter Real k2b = 0.3;
// parameter Real q = 2.0;
// parameter Real k2d = 0.05;
// parameter Real k2t = 0.24;
// parameter Real k3t = 0.02;
// parameter Real k3d = 0.12;
// parameter Real k4d = 0.75;
// parameter Real k5b = 0.24;
// parameter Real k5d = 0.06;
// parameter Real k5t = 0.45;
// parameter Real k6t = 0.06;
// parameter Real k6d = 0.12;
// parameter Real k6a = 0.09;
// parameter Real k7a = 0.003;
// parameter Real k7d = 0.09;
// equation
// der(nucleus.y3.n) = nucleus.y3.rNet;
// nucleus.y3.rNet = nucleus.y3.n1.r;
// nucleus.y3.c = nucleus.y3.n1.c;
// nucleus.V = nucleus.y3.n1.V;
// nucleus.y3.c = nucleus.y3.n / nucleus.V;
// der(nucleus.y6.n) = nucleus.y6.rNet;
// nucleus.y6.rNet = nucleus.y6.n1.r;
// nucleus.y6.c = nucleus.y6.n1.c;
// nucleus.V = nucleus.y6.n1.V;
// nucleus.y6.c = nucleus.y6.n / nucleus.V;
// der(nucleus.y7.n) = nucleus.y7.rNet;
// nucleus.y7.rNet = nucleus.y7.n1.r;
// nucleus.y7.c = nucleus.y7.n1.c;
// nucleus.V = nucleus.y7.n1.V;
// nucleus.y7.c = nucleus.y7.n / nucleus.V;
// nucleus.per2_cry_nuclear_export.rr = nucleus.Nucleus_V * nucleus.per2_cry_nuclear_export.k3t * nucleus.per2_cry_nuclear_export.s1.c;
// nucleus.per2_cry_nuclear_export.s1.r = nucleus.per2_cry_nuclear_export.nS1 * nucleus.per2_cry_nuclear_export.rr;
// nucleus.per2_cry_nuclear_export.p1.r = (-nucleus.per2_cry_nuclear_export.nP1) * nucleus.per2_cry_nuclear_export.rr;
// der(nucleus.ambientSubstance.n) = 0.0;
// nucleus.ambientSubstance.rNet = nucleus.ambientSubstance.n1.r;
// nucleus.ambientSubstance.c = nucleus.ambientSubstance.n1.c;
// nucleus.V = nucleus.ambientSubstance.n1.V;
// nucleus.ambientSubstance.c = nucleus.ambientSubstance.n / nucleus.V;
// nucleus.nuclear_per2_cry_complex_degradation.rr = nucleus.Nucleus_V * nucleus.nuclear_per2_cry_complex_degradation.k3d * nucleus.nuclear_per2_cry_complex_degradation.s1.c;
// nucleus.nuclear_per2_cry_complex_degradation.s1.r = nucleus.nuclear_per2_cry_complex_degradation.nS1 * nucleus.nuclear_per2_cry_complex_degradation.rr;
// nucleus.nuclear_per2_cry_complex_degradation.p1.r = (-nucleus.nuclear_per2_cry_complex_degradation.nP1) * nucleus.nuclear_per2_cry_complex_degradation.rr;
// nucleus.BMAL1_nuclear_export.rr = nucleus.Nucleus_V * nucleus.BMAL1_nuclear_export.k6t * nucleus.BMAL1_nuclear_export.s1.c;
// nucleus.BMAL1_nuclear_export.s1.r = nucleus.BMAL1_nuclear_export.nS1 * nucleus.BMAL1_nuclear_export.rr;
// nucleus.BMAL1_nuclear_export.p1.r = (-nucleus.BMAL1_nuclear_export.nP1) * nucleus.BMAL1_nuclear_export.rr;
// nucleus.nuclear_BMAL1_degradation.rr = nucleus.Nucleus_V * nucleus.nuclear_BMAL1_degradation.k6d * nucleus.nuclear_BMAL1_degradation.s1.c;
// nucleus.nuclear_BMAL1_degradation.s1.r = nucleus.nuclear_BMAL1_degradation.nS1 * nucleus.nuclear_BMAL1_degradation.rr;
// nucleus.nuclear_BMAL1_degradation.p1.r = (-nucleus.nuclear_BMAL1_degradation.nP1) * nucleus.nuclear_BMAL1_degradation.rr;
// nucleus.BMAL1_activation.rr = nucleus.Nucleus_V * nucleus.BMAL1_activation.k6a * nucleus.BMAL1_activation.s1.c;
// nucleus.BMAL1_activation.s1.r = nucleus.BMAL1_activation.nS1 * nucleus.BMAL1_activation.rr;
// nucleus.BMAL1_activation.p1.r = (-nucleus.BMAL1_activation.nP1) * nucleus.BMAL1_activation.rr;
// nucleus.BMAL1_deactivation.rr = nucleus.Nucleus_V * nucleus.BMAL1_deactivation.k7a * nucleus.BMAL1_deactivation.s1.c;
// nucleus.BMAL1_deactivation.s1.r = nucleus.BMAL1_deactivation.nS1 * nucleus.BMAL1_deactivation.rr;
// nucleus.BMAL1_deactivation.p1.r = (-nucleus.BMAL1_deactivation.nP1) * nucleus.BMAL1_deactivation.rr;
// nucleus.Active_BMAL1_degradation.rr = nucleus.Nucleus_V * nucleus.Active_BMAL1_degradation.k7d * nucleus.Active_BMAL1_degradation.s1.c;
// nucleus.Active_BMAL1_degradation.s1.r = nucleus.Active_BMAL1_degradation.nS1 * nucleus.Active_BMAL1_degradation.rr;
// nucleus.Active_BMAL1_degradation.p1.r = (-nucleus.Active_BMAL1_degradation.nP1) * nucleus.Active_BMAL1_degradation.rr;
// der(nucleus.V) = 0.0 \"Compartment volume is constant\";
// der(cytoplasm.y1.n) = cytoplasm.y1.rNet;
// cytoplasm.y1.rNet = cytoplasm.y1.n1.r;
// cytoplasm.y1.c = cytoplasm.y1.n1.c;
// cytoplasm.V = cytoplasm.y1.n1.V;
// cytoplasm.y1.c = cytoplasm.y1.n / cytoplasm.V;
// der(cytoplasm.y2.n) = cytoplasm.y2.rNet;
// cytoplasm.y2.rNet = cytoplasm.y2.n1.r;
// cytoplasm.y2.c = cytoplasm.y2.n1.c;
// cytoplasm.V = cytoplasm.y2.n1.V;
// cytoplasm.y2.c = cytoplasm.y2.n / cytoplasm.V;
// der(cytoplasm.y4.n) = cytoplasm.y4.rNet;
// cytoplasm.y4.rNet = cytoplasm.y4.n1.r;
// cytoplasm.y4.c = cytoplasm.y4.n1.c;
// cytoplasm.V = cytoplasm.y4.n1.V;
// cytoplasm.y4.c = cytoplasm.y4.n / cytoplasm.V;
// der(cytoplasm.y5.n) = cytoplasm.y5.rNet;
// cytoplasm.y5.rNet = cytoplasm.y5.n1.r;
// cytoplasm.y5.c = cytoplasm.y5.n1.c;
// cytoplasm.V = cytoplasm.y5.n1.V;
// cytoplasm.y5.c = cytoplasm.y5.n / cytoplasm.V;
// der(cytoplasm.ambientSubstance.n) = 0.0;
// cytoplasm.ambientSubstance.rNet = cytoplasm.ambientSubstance.n1.r;
// cytoplasm.ambientSubstance.c = cytoplasm.ambientSubstance.n1.c;
// cytoplasm.V = cytoplasm.ambientSubstance.n1.V;
// cytoplasm.ambientSubstance.c = cytoplasm.ambientSubstance.n / cytoplasm.V;
// cytoplasm.per2_cry_transcription.rr = cytoplasm.Cytoplasm_V * cytoplasm.per2_cry_transcription.trans_per2_cry;
// cytoplasm.per2_cry_transcription.s1.r = cytoplasm.per2_cry_transcription.nS1 * cytoplasm.per2_cry_transcription.rr;
// cytoplasm.per2_cry_transcription.p1.r = (-cytoplasm.per2_cry_transcription.nP1) * cytoplasm.per2_cry_transcription.rr;
// cytoplasm.per2_cry_mRNA_degradation.rr = cytoplasm.Cytoplasm_V * cytoplasm.per2_cry_mRNA_degradation.k1d * cytoplasm.per2_cry_mRNA_degradation.s1.c;
// cytoplasm.per2_cry_mRNA_degradation.s1.r = cytoplasm.per2_cry_mRNA_degradation.nS1 * cytoplasm.per2_cry_mRNA_degradation.rr;
// cytoplasm.per2_cry_mRNA_degradation.p1.r = (-cytoplasm.per2_cry_mRNA_degradation.nP1) * cytoplasm.per2_cry_mRNA_degradation.rr;
// cytoplasm.per2_cry_complex_formation.rr = cytoplasm.Cytoplasm_V * cytoplasm.per2_cry_complex_formation.k2b * cytoplasm.per2_cry_complex_formation.m1.c ^ cytoplasm.per2_cry_complex_formation.q;
// cytoplasm.per2_cry_complex_formation.s1.r = cytoplasm.per2_cry_complex_formation.nS1 * cytoplasm.per2_cry_complex_formation.rr;
// cytoplasm.per2_cry_complex_formation.p1.r = (-cytoplasm.per2_cry_complex_formation.nP1) * cytoplasm.per2_cry_complex_formation.rr;
// cytoplasm.per2_cry_complex_formation.m1.r = 0.0;
// cytoplasm.cytoplasmic_per2_cry_complex_degradation.rr = cytoplasm.Cytoplasm_V * cytoplasm.cytoplasmic_per2_cry_complex_degradation.k2d * cytoplasm.cytoplasmic_per2_cry_complex_degradation.s1.c;
// cytoplasm.cytoplasmic_per2_cry_complex_degradation.s1.r = cytoplasm.cytoplasmic_per2_cry_complex_degradation.nS1 * cytoplasm.cytoplasmic_per2_cry_complex_degradation.rr;
// cytoplasm.cytoplasmic_per2_cry_complex_degradation.p1.r = (-cytoplasm.cytoplasmic_per2_cry_complex_degradation.nP1) * cytoplasm.cytoplasmic_per2_cry_complex_degradation.rr;
// cytoplasm.per2_cry_nuclear_import.rr = cytoplasm.Cytoplasm_V * cytoplasm.per2_cry_nuclear_import.k2t * cytoplasm.per2_cry_nuclear_import.s1.c;
// cytoplasm.per2_cry_nuclear_import.s1.r = cytoplasm.per2_cry_nuclear_import.nS1 * cytoplasm.per2_cry_nuclear_import.rr;
// cytoplasm.per2_cry_nuclear_import.p1.r = (-cytoplasm.per2_cry_nuclear_import.nP1) * cytoplasm.per2_cry_nuclear_import.rr;
// cytoplasm.Bmal1_transcription.rr = cytoplasm.Cytoplasm_V * cytoplasm.Bmal1_transcription.trans_Bmal1;
// cytoplasm.Bmal1_transcription.s1.r = cytoplasm.Bmal1_transcription.nS1 * cytoplasm.Bmal1_transcription.rr;
// cytoplasm.Bmal1_transcription.p1.r = (-cytoplasm.Bmal1_transcription.nP1) * cytoplasm.Bmal1_transcription.rr;
// cytoplasm.Bmal1_mRNA_degradation.rr = cytoplasm.Cytoplasm_V * cytoplasm.Bmal1_mRNA_degradation.k4d * cytoplasm.Bmal1_mRNA_degradation.s1.c;
// cytoplasm.Bmal1_mRNA_degradation.s1.r = cytoplasm.Bmal1_mRNA_degradation.nS1 * cytoplasm.Bmal1_mRNA_degradation.rr;
// cytoplasm.Bmal1_mRNA_degradation.p1.r = (-cytoplasm.Bmal1_mRNA_degradation.nP1) * cytoplasm.Bmal1_mRNA_degradation.rr;
// cytoplasm.BMAL1_translation.rr = cytoplasm.Cytoplasm_V * cytoplasm.BMAL1_translation.k5b * cytoplasm.BMAL1_translation.m1.c;
// cytoplasm.BMAL1_translation.s1.r = cytoplasm.BMAL1_translation.nS1 * cytoplasm.BMAL1_translation.rr;
// cytoplasm.BMAL1_translation.p1.r = (-cytoplasm.BMAL1_translation.nP1) * cytoplasm.BMAL1_translation.rr;
// cytoplasm.BMAL1_translation.m1.r = 0.0;
// cytoplasm.cytoplasmic_BMAL1_degradation.rr = cytoplasm.Cytoplasm_V * cytoplasm.cytoplasmic_BMAL1_degradation.k5d * cytoplasm.cytoplasmic_BMAL1_degradation.s1.c;
// cytoplasm.cytoplasmic_BMAL1_degradation.s1.r = cytoplasm.cytoplasmic_BMAL1_degradation.nS1 * cytoplasm.cytoplasmic_BMAL1_degradation.rr;
// cytoplasm.cytoplasmic_BMAL1_degradation.p1.r = (-cytoplasm.cytoplasmic_BMAL1_degradation.nP1) * cytoplasm.cytoplasmic_BMAL1_degradation.rr;
// cytoplasm.BMAL1_nuclear_import.rr = cytoplasm.Cytoplasm_V * cytoplasm.BMAL1_nuclear_import.k5t * cytoplasm.BMAL1_nuclear_import.s1.c;
// cytoplasm.BMAL1_nuclear_import.s1.r = cytoplasm.BMAL1_nuclear_import.nS1 * cytoplasm.BMAL1_nuclear_import.rr;
// cytoplasm.BMAL1_nuclear_import.p1.r = (-cytoplasm.BMAL1_nuclear_import.nP1) * cytoplasm.BMAL1_nuclear_import.rr;
// der(cytoplasm.V) = 0.0 \"Compartment volume is constant\";
// trans_per2_cry = v1b * (nucleus.y7.c + c_sbml) / (k1b * (1.0 + (nucleus.y3.c / k1i) ^ hill_coeff) + nucleus.y7.c + c_sbml);
// trans_Bmal1 = v4b * nucleus.y3.c ^ r_sbml / (k4b ^ r_sbml + nucleus.y3.c ^ r_sbml);
// y5_y6_y7 = cytoplasm.y5.c + nucleus.y6.c + nucleus.y7.c;
// der(V) = 0.0 \"Compartment volume is constant\";
// cytoplasm.y1.n1.r + cytoplasm.per2_cry_transcription.p1.r + cytoplasm.per2_cry_mRNA_degradation.s1.r + cytoplasm.per2_cry_complex_formation.m1.r = 0.0;
// cytoplasm.y2.n1.r + (-cytoplasm.y2_node.r) + cytoplasm.per2_cry_complex_formation.p1.r + cytoplasm.cytoplasmic_per2_cry_complex_degradation.s1.r + cytoplasm.per2_cry_nuclear_import.s1.r = 0.0;
// cytoplasm.y4.n1.r + cytoplasm.Bmal1_transcription.p1.r + cytoplasm.Bmal1_mRNA_degradation.s1.r + cytoplasm.BMAL1_translation.m1.r = 0.0;
// cytoplasm.y5.n1.r + (-cytoplasm.y5_node.r) + cytoplasm.BMAL1_translation.p1.r + cytoplasm.cytoplasmic_BMAL1_degradation.s1.r + cytoplasm.BMAL1_nuclear_import.s1.r = 0.0;
// cytoplasm.ambientSubstance.n1.r + cytoplasm.per2_cry_transcription.s1.r + cytoplasm.per2_cry_mRNA_degradation.p1.r + cytoplasm.per2_cry_complex_formation.s1.r + cytoplasm.cytoplasmic_per2_cry_complex_degradation.p1.r + cytoplasm.Bmal1_transcription.s1.r + cytoplasm.Bmal1_mRNA_degradation.p1.r + cytoplasm.BMAL1_translation.s1.r + cytoplasm.cytoplasmic_BMAL1_degradation.p1.r = 0.0;
// cytoplasm.y3_node.r + nucleus.y3_node.r = 0.0;
// cytoplasm.y2_node.r + nucleus.y2_node.r = 0.0;
// cytoplasm.y6_node.r + nucleus.y6_node.r = 0.0;
// cytoplasm.y5_node.r + nucleus.y5_node.r = 0.0;
// (-cytoplasm.y3_node.r) + cytoplasm.per2_cry_nuclear_import.p1.r = 0.0;
// (-cytoplasm.y6_node.r) + cytoplasm.BMAL1_nuclear_import.p1.r = 0.0;
// cytoplasm.BMAL1_nuclear_import.p1.V = cytoplasm.y6_node.V;
// cytoplasm.BMAL1_nuclear_import.p1.c = cytoplasm.y6_node.c;
// cytoplasm.cytoplasmic_per2_cry_complex_degradation.s1.V = cytoplasm.per2_cry_complex_formation.p1.V;
// cytoplasm.cytoplasmic_per2_cry_complex_degradation.s1.V = cytoplasm.per2_cry_nuclear_import.s1.V;
// cytoplasm.cytoplasmic_per2_cry_complex_degradation.s1.V = cytoplasm.y2.n1.V;
// cytoplasm.cytoplasmic_per2_cry_complex_degradation.s1.V = cytoplasm.y2_node.V;
// cytoplasm.cytoplasmic_per2_cry_complex_degradation.s1.c = cytoplasm.per2_cry_complex_formation.p1.c;
// cytoplasm.cytoplasmic_per2_cry_complex_degradation.s1.c = cytoplasm.per2_cry_nuclear_import.s1.c;
// cytoplasm.cytoplasmic_per2_cry_complex_degradation.s1.c = cytoplasm.y2.n1.c;
// cytoplasm.cytoplasmic_per2_cry_complex_degradation.s1.c = cytoplasm.y2_node.c;
// cytoplasm.per2_cry_nuclear_import.p1.V = cytoplasm.y3_node.V;
// cytoplasm.per2_cry_nuclear_import.p1.c = cytoplasm.y3_node.c;
// cytoplasm.BMAL1_nuclear_import.s1.V = cytoplasm.BMAL1_translation.p1.V;
// cytoplasm.BMAL1_nuclear_import.s1.V = cytoplasm.cytoplasmic_BMAL1_degradation.s1.V;
// cytoplasm.BMAL1_nuclear_import.s1.V = cytoplasm.y5.n1.V;
// cytoplasm.BMAL1_nuclear_import.s1.V = cytoplasm.y5_node.V;
// cytoplasm.BMAL1_nuclear_import.s1.c = cytoplasm.BMAL1_translation.p1.c;
// cytoplasm.BMAL1_nuclear_import.s1.c = cytoplasm.cytoplasmic_BMAL1_degradation.s1.c;
// cytoplasm.BMAL1_nuclear_import.s1.c = cytoplasm.y5.n1.c;
// cytoplasm.BMAL1_nuclear_import.s1.c = cytoplasm.y5_node.c;
// cytoplasm.per2_cry_complex_formation.m1.V = cytoplasm.per2_cry_mRNA_degradation.s1.V;
// cytoplasm.per2_cry_complex_formation.m1.V = cytoplasm.per2_cry_transcription.p1.V;
// cytoplasm.per2_cry_complex_formation.m1.V = cytoplasm.y1.n1.V;
// cytoplasm.per2_cry_complex_formation.m1.c = cytoplasm.per2_cry_mRNA_degradation.s1.c;
// cytoplasm.per2_cry_complex_formation.m1.c = cytoplasm.per2_cry_transcription.p1.c;
// cytoplasm.per2_cry_complex_formation.m1.c = cytoplasm.y1.n1.c;
// cytoplasm.BMAL1_translation.s1.V = cytoplasm.Bmal1_mRNA_degradation.p1.V;
// cytoplasm.BMAL1_translation.s1.V = cytoplasm.Bmal1_transcription.s1.V;
// cytoplasm.BMAL1_translation.s1.V = cytoplasm.ambientSubstance.n1.V;
// cytoplasm.BMAL1_translation.s1.V = cytoplasm.cytoplasmic_BMAL1_degradation.p1.V;
// cytoplasm.BMAL1_translation.s1.V = cytoplasm.cytoplasmic_per2_cry_complex_degradation.p1.V;
// cytoplasm.BMAL1_translation.s1.V = cytoplasm.per2_cry_complex_formation.s1.V;
// cytoplasm.BMAL1_translation.s1.V = cytoplasm.per2_cry_mRNA_degradation.p1.V;
// cytoplasm.BMAL1_translation.s1.V = cytoplasm.per2_cry_transcription.s1.V;
// cytoplasm.BMAL1_translation.s1.c = cytoplasm.Bmal1_mRNA_degradation.p1.c;
// cytoplasm.BMAL1_translation.s1.c = cytoplasm.Bmal1_transcription.s1.c;
// cytoplasm.BMAL1_translation.s1.c = cytoplasm.ambientSubstance.n1.c;
// cytoplasm.BMAL1_translation.s1.c = cytoplasm.cytoplasmic_BMAL1_degradation.p1.c;
// cytoplasm.BMAL1_translation.s1.c = cytoplasm.cytoplasmic_per2_cry_complex_degradation.p1.c;
// cytoplasm.BMAL1_translation.s1.c = cytoplasm.per2_cry_complex_formation.s1.c;
// cytoplasm.BMAL1_translation.s1.c = cytoplasm.per2_cry_mRNA_degradation.p1.c;
// cytoplasm.BMAL1_translation.s1.c = cytoplasm.per2_cry_transcription.s1.c;
// cytoplasm.BMAL1_translation.m1.V = cytoplasm.Bmal1_mRNA_degradation.s1.V;
// cytoplasm.BMAL1_translation.m1.V = cytoplasm.Bmal1_transcription.p1.V;
// cytoplasm.BMAL1_translation.m1.V = cytoplasm.y4.n1.V;
// cytoplasm.BMAL1_translation.m1.c = cytoplasm.Bmal1_mRNA_degradation.s1.c;
// cytoplasm.BMAL1_translation.m1.c = cytoplasm.Bmal1_transcription.p1.c;
// cytoplasm.BMAL1_translation.m1.c = cytoplasm.y4.n1.c;
// nucleus.y3.n1.r + (-nucleus.y3_node.r) + nucleus.per2_cry_nuclear_export.s1.r + nucleus.nuclear_per2_cry_complex_degradation.s1.r = 0.0;
// nucleus.y6.n1.r + (-nucleus.y6_node.r) + nucleus.BMAL1_nuclear_export.s1.r + nucleus.nuclear_BMAL1_degradation.s1.r + nucleus.BMAL1_activation.s1.r + nucleus.BMAL1_deactivation.p1.r = 0.0;
// nucleus.y7.n1.r + nucleus.BMAL1_activation.p1.r + nucleus.BMAL1_deactivation.s1.r + nucleus.Active_BMAL1_degradation.s1.r = 0.0;
// nucleus.ambientSubstance.n1.r + nucleus.nuclear_per2_cry_complex_degradation.p1.r + nucleus.nuclear_BMAL1_degradation.p1.r + nucleus.Active_BMAL1_degradation.p1.r = 0.0;
// (-nucleus.y2_node.r) + nucleus.per2_cry_nuclear_export.p1.r = 0.0;
// (-nucleus.y5_node.r) + nucleus.BMAL1_nuclear_export.p1.r = 0.0;
// nucleus.nuclear_per2_cry_complex_degradation.s1.V = nucleus.per2_cry_nuclear_export.s1.V;
// nucleus.nuclear_per2_cry_complex_degradation.s1.V = nucleus.y3.n1.V;
// nucleus.nuclear_per2_cry_complex_degradation.s1.V = nucleus.y3_node.V;
// nucleus.nuclear_per2_cry_complex_degradation.s1.c = nucleus.per2_cry_nuclear_export.s1.c;
// nucleus.nuclear_per2_cry_complex_degradation.s1.c = nucleus.y3.n1.c;
// nucleus.nuclear_per2_cry_complex_degradation.s1.c = nucleus.y3_node.c;
// nucleus.Active_BMAL1_degradation.s1.V = nucleus.BMAL1_activation.p1.V;
// nucleus.Active_BMAL1_degradation.s1.V = nucleus.BMAL1_deactivation.s1.V;
// nucleus.Active_BMAL1_degradation.s1.V = nucleus.y7.n1.V;
// nucleus.Active_BMAL1_degradation.s1.c = nucleus.BMAL1_activation.p1.c;
// nucleus.Active_BMAL1_degradation.s1.c = nucleus.BMAL1_deactivation.s1.c;
// nucleus.Active_BMAL1_degradation.s1.c = nucleus.y7.n1.c;
// nucleus.BMAL1_activation.s1.V = nucleus.BMAL1_deactivation.p1.V;
// nucleus.BMAL1_activation.s1.V = nucleus.BMAL1_nuclear_export.s1.V;
// nucleus.BMAL1_activation.s1.V = nucleus.nuclear_BMAL1_degradation.s1.V;
// nucleus.BMAL1_activation.s1.V = nucleus.y6.n1.V;
// nucleus.BMAL1_activation.s1.V = nucleus.y6_node.V;
// nucleus.BMAL1_activation.s1.c = nucleus.BMAL1_deactivation.p1.c;
// nucleus.BMAL1_activation.s1.c = nucleus.BMAL1_nuclear_export.s1.c;
// nucleus.BMAL1_activation.s1.c = nucleus.nuclear_BMAL1_degradation.s1.c;
// nucleus.BMAL1_activation.s1.c = nucleus.y6.n1.c;
// nucleus.BMAL1_activation.s1.c = nucleus.y6_node.c;
// nucleus.Active_BMAL1_degradation.p1.V = nucleus.ambientSubstance.n1.V;
// nucleus.Active_BMAL1_degradation.p1.V = nucleus.nuclear_BMAL1_degradation.p1.V;
// nucleus.Active_BMAL1_degradation.p1.V = nucleus.nuclear_per2_cry_complex_degradation.p1.V;
// nucleus.Active_BMAL1_degradation.p1.c = nucleus.ambientSubstance.n1.c;
// nucleus.Active_BMAL1_degradation.p1.c = nucleus.nuclear_BMAL1_degradation.p1.c;
// nucleus.Active_BMAL1_degradation.p1.c = nucleus.nuclear_per2_cry_complex_degradation.p1.c;
// nucleus.BMAL1_nuclear_export.p1.V = nucleus.y5_node.V;
// nucleus.BMAL1_nuclear_export.p1.c = nucleus.y5_node.c;
// nucleus.per2_cry_nuclear_export.p1.V = nucleus.y2_node.V;
// nucleus.per2_cry_nuclear_export.p1.c = nucleus.y2_node.c;
// cytoplasm.y5_node.V = nucleus.y5_node.V;
// cytoplasm.y5_node.c = nucleus.y5_node.c;
// cytoplasm.y6_node.V = nucleus.y6_node.V;
// cytoplasm.y6_node.c = nucleus.y6_node.c;
// cytoplasm.y2_node.V = nucleus.y2_node.V;
// cytoplasm.y2_node.c = nucleus.y2_node.c;
// cytoplasm.y3_node.V = nucleus.y3_node.V;
// cytoplasm.y3_node.c = nucleus.y3_node.c;
// end BioChem_Examples_CircadianOscillator_Container;
// "
// "[flattening/libraries/biochem/ContainerSimple.mo:177:9-177:51:writable] Warning: Connecting two signal sources while connecting cytoplasm.y5_node.V to nucleus.y5_node.V.
// [flattening/libraries/biochem/ContainerSimple.mo:178:9-178:51:writable] Warning: Connecting two signal sources while connecting nucleus.y6_node.V to cytoplasm.y6_node.V.
// [flattening/libraries/biochem/ContainerSimple.mo:179:9-179:51:writable] Warning: Connecting two signal sources while connecting cytoplasm.y2_node.V to nucleus.y2_node.V.
// [flattening/libraries/biochem/ContainerSimple.mo:180:9-180:51:writable] Warning: Connecting two signal sources while connecting nucleus.y3_node.V to cytoplasm.y3_node.V.
// "
// "Check of BioChem_Examples_CircadianOscillator_Container completed successfully.
// Class BioChem_Examples_CircadianOscillator_Container has 252 equation(s) and 252 variable(s).
// 180 of these are trivial equation(s)."
// "[flattening/libraries/biochem/ContainerSimple.mo:177:9-177:51:writable] Warning: Connecting two signal sources while connecting cytoplasm.y5_node.V to nucleus.y5_node.V.
// [flattening/libraries/biochem/ContainerSimple.mo:178:9-178:51:writable] Warning: Connecting two signal sources while connecting nucleus.y6_node.V to cytoplasm.y6_node.V.
// [flattening/libraries/biochem/ContainerSimple.mo:179:9-179:51:writable] Warning: Connecting two signal sources while connecting cytoplasm.y2_node.V to nucleus.y2_node.V.
// [flattening/libraries/biochem/ContainerSimple.mo:180:9-180:51:writable] Warning: Connecting two signal sources while connecting nucleus.y3_node.V to cytoplasm.y3_node.V.
// "
// true
// true
// "Warning: Requested package Modelica of version 2.2.1, but this package was already loaded with version 3.1. You might experience problems if these versions are incompatible.
// "
// "class BioChem_Examples_centralMetabolism_extra_cellular
// Real V(quantity = \"Volume\", unit = \"l\", start = 2.0, stateSelect = StateSelect.prefer) \"Compartment volume\";
// Real cytosol.V(quantity = \"Volume\", unit = \"l\", start = 2.0, stateSelect = StateSelect.prefer) \"Compartment volume\";
// Real cytosol.cytosol_V = cytosol.V \"Variable used to make the compartment volume accessible for inner components. Do not edit.\";
// Real cytosol.NADH.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0, start = 0.00406177, stateSelect = StateSelect.prefer) \"Current concentration of substance (mM)\";
// Real cytosol.NADH.rNet(quantity = \"Molar flow rate\", unit = \"mol/s\") \"Net flow rate of substance into the node\";
// Real cytosol.NADH.n(quantity = \"AmountOfSubstance\", unit = \"mol\", min = 0.0, stateSelect = StateSelect.prefer) \"Number of moles of substance in pool (mol)\";
// Real cytosol.NADH.n1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.NADH.n1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.NADH.n1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.FDP.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0, start = 0.0999758, stateSelect = StateSelect.prefer) \"Current concentration of substance (mM)\";
// Real cytosol.FDP.rNet(quantity = \"Molar flow rate\", unit = \"mol/s\") \"Net flow rate of substance into the node\";
// Real cytosol.FDP.n(quantity = \"AmountOfSubstance\", unit = \"mol\", min = 0.0, stateSelect = StateSelect.prefer) \"Number of moles of substance in pool (mol)\";
// Real cytosol.FDP.n1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.FDP.n1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.FDP.n1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.PYR.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0, start = 0.148871, stateSelect = StateSelect.prefer) \"Current concentration of substance (mM)\";
// Real cytosol.PYR.rNet(quantity = \"Molar flow rate\", unit = \"mol/s\") \"Net flow rate of substance into the node\";
// Real cytosol.PYR.n(quantity = \"AmountOfSubstance\", unit = \"mol\", min = 0.0, stateSelect = StateSelect.prefer) \"Number of moles of substance in pool (mol)\";
// Real cytosol.PYR.n1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.PYR.n1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.PYR.n1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.ADP.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0, start = 0.0695775, stateSelect = StateSelect.prefer) \"Current concentration of substance (mM)\";
// Real cytosol.ADP.rNet(quantity = \"Molar flow rate\", unit = \"mol/s\") \"Net flow rate of substance into the node\";
// Real cytosol.ADP.n(quantity = \"AmountOfSubstance\", unit = \"mol\", min = 0.0, stateSelect = StateSelect.prefer) \"Number of moles of substance in pool (mol)\";
// Real cytosol.ADP.n1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.ADP.n1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.ADP.n1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.IMP.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0, start = 0.650608, stateSelect = StateSelect.prefer) \"Current concentration of substance (mM)\";
// Real cytosol.IMP.rNet(quantity = \"Molar flow rate\", unit = \"mol/s\") \"Net flow rate of substance into the node\";
// Real cytosol.IMP.n(quantity = \"AmountOfSubstance\", unit = \"mol\", min = 0.0, stateSelect = StateSelect.prefer) \"Number of moles of substance in pool (mol)\";
// Real cytosol.IMP.n1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.IMP.n1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.IMP.n1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.ATP.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0, start = 12.7913) = cytosol.atp \"Current concentration of substance (mM)\";
// Real cytosol.ATP.rNet(quantity = \"Molar flow rate\", unit = \"mol/s\") \"Net flow rate of substance into the node\";
// Real cytosol.ATP.n(quantity = \"AmountOfSubstance\", unit = \"mol\", min = 0.0) \"Number of moles of substance in pool (mol)\";
// Real cytosol.ATP.n1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.ATP.n1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.ATP.n1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.AMP.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0, start = 0.000398124, stateSelect = StateSelect.prefer) \"Current concentration of substance (mM)\";
// Real cytosol.AMP.rNet(quantity = \"Molar flow rate\", unit = \"mol/s\") \"Net flow rate of substance into the node\";
// Real cytosol.AMP.n(quantity = \"AmountOfSubstance\", unit = \"mol\", min = 0.0, stateSelect = StateSelect.prefer) \"Number of moles of substance in pool (mol)\";
// Real cytosol.AMP.n1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.AMP.n1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.AMP.n1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.LAC.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0, start = 4.34299, stateSelect = StateSelect.prefer) \"Current concentration of substance (mM)\";
// Real cytosol.LAC.rNet(quantity = \"Molar flow rate\", unit = \"mol/s\") \"Net flow rate of substance into the node\";
// Real cytosol.LAC.n(quantity = \"AmountOfSubstance\", unit = \"mol\", min = 0.0, stateSelect = StateSelect.prefer) \"Number of moles of substance in pool (mol)\";
// Real cytosol.LAC.n1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.LAC.n1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.LAC.n1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.NAD.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0, start = 0.6959379999999999) = cytosol.nad \"Current concentration of substance (mM)\";
// Real cytosol.NAD.rNet(quantity = \"Molar flow rate\", unit = \"mol/s\") \"Net flow rate of substance into the node\";
// Real cytosol.NAD.n(quantity = \"AmountOfSubstance\", unit = \"mol\", min = 0.0) \"Number of moles of substance in pool (mol)\";
// Real cytosol.NAD.n1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.NAD.n1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.NAD.n1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.CP.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0, start = 28.2621, stateSelect = StateSelect.prefer) \"Current concentration of substance (mM)\";
// Real cytosol.CP.rNet(quantity = \"Molar flow rate\", unit = \"mol/s\") \"Net flow rate of substance into the node\";
// Real cytosol.CP.n(quantity = \"AmountOfSubstance\", unit = \"mol\", min = 0.0, stateSelect = StateSelect.prefer) \"Number of moles of substance in pool (mol)\";
// Real cytosol.CP.n1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.CP.n1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.CP.n1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.Cr.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0, start = 25.7379) = cytosol.cr \"Current concentration of substance (mM)\";
// Real cytosol.Cr.rNet(quantity = \"Molar flow rate\", unit = \"mol/s\") \"Net flow rate of substance into the node\";
// Real cytosol.Cr.n(quantity = \"AmountOfSubstance\", unit = \"mol\", min = 0.0) \"Number of moles of substance in pool (mol)\";
// Real cytosol.Cr.n1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.Cr.n1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.Cr.n1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.GLY.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0, start = 1.0, stateSelect = StateSelect.prefer) \"Current concentration of substance (mM)\";
// Real cytosol.GLY.rNet(quantity = \"Molar flow rate\", unit = \"mol/s\") \"Net flow rate of substance into the node\";
// Real cytosol.GLY.n(quantity = \"AmountOfSubstance\", unit = \"mol\", min = 0.0, stateSelect = StateSelect.prefer) \"Number of moles of substance in pool (mol)\";
// Real cytosol.GLY.n1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.GLY.n1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.GLY.n1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.PN.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0) = cytosol.pn \"Current concentration of substance (mM)\";
// Real cytosol.PN.rNet(quantity = \"Molar flow rate\", unit = \"mol/s\") \"Net flow rate of substance into the node\";
// Real cytosol.PN.n(quantity = \"AmountOfSubstance\", unit = \"mol\", min = 0.0) \"Number of moles of substance in pool (mol)\";
// Real cytosol.PN.n1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.PN.n1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.PN.n1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.G6P.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0, start = 0.603855 / (1.0 + cytosol.kh), stateSelect = StateSelect.prefer) \"Current concentration of substance (mM)\";
// Real cytosol.G6P.rNet(quantity = \"Molar flow rate\", unit = \"mol/s\") \"Net flow rate of substance into the node\";
// Real cytosol.G6P.n(quantity = \"AmountOfSubstance\", unit = \"mol\", min = 0.0, stateSelect = StateSelect.prefer) \"Number of moles of substance in pool (mol)\";
// Real cytosol.G6P.n1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.G6P.n1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.G6P.n1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.F6P.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0, start = 0.603855 * cytosol.kh / (1.0 + cytosol.kh), stateSelect = StateSelect.prefer) \"Current concentration of substance (mM)\";
// Real cytosol.F6P.rNet(quantity = \"Molar flow rate\", unit = \"mol/s\") \"Net flow rate of substance into the node\";
// Real cytosol.F6P.n(quantity = \"AmountOfSubstance\", unit = \"mol\", min = 0.0, stateSelect = StateSelect.prefer) \"Number of moles of substance in pool (mol)\";
// Real cytosol.F6P.n1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.F6P.n1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.F6P.n1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.jda.rr(quantity = \"Reaction rate\", unit = \"mol/s\") \"Rate of the reaction\";
// Real cytosol.jda.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.jda.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.jda.s1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.jda.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.jda.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.jda.p1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.jda.nS1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = cytosol.cytosol_V / cytosol.jda.bamp \"Stoichiometric coefficient for the substrate\";
// Real cytosol.jda.nP1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = cytosol.cytosol_V \"Stoichiometric coefficient for the product\";
// parameter Real cytosol.jda.KmAMP = 0.3;
// parameter Real cytosol.jda.KmIMP = 3.54545;
// parameter Real cytosol.jda.KcatDA = 121.0;
// Real cytosol.jda.bamp = cytosol.bamp;
// Real cytosol.vpfk.rr(quantity = \"Reaction rate\", unit = \"mol/s\") \"Rate of the reaction\";
// Real cytosol.vpfk.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.vpfk.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.vpfk.s1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.vpfk.p2.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.vpfk.p2.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.vpfk.p2.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.vpfk.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.vpfk.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.vpfk.p1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.vpfk.nS1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the substrate\";
// Real cytosol.vpfk.nP1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for product 1\";
// Real cytosol.vpfk.nP2(quantity = \"Stoichiometric coefficient\", unit = \"1\") = cytosol.cytosol_V / cytosol.vpfk.badp \"Stoichiometric coefficient for product 2\";
// parameter Real cytosol.vpfk.n_sbml = 2.0;
// parameter Real cytosol.vpfk.KcatPFK = 400.0;
// parameter Real cytosol.vpfk.KmF6P = 3.49515;
// Real cytosol.vpfk.badp = cytosol.badp;
// Real cytosol.vldh.rr(quantity = \"Reaction rate\", unit = \"mol/s\") \"Rate of the reaction\";
// Real cytosol.vldh.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.vldh.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.vldh.s1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.vldh.s2.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.vldh.s2.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.vldh.s2.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.vldh.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.vldh.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.vldh.p1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.vldh.nS1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for substrate 1\";
// Real cytosol.vldh.nS2(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for substrate 2\";
// Real cytosol.vldh.nP1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the product\";
// Real cytosol.vldh.m1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.vldh.m1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.vldh.m1.V(quantity = \"Volume\", unit = \"l\");
// parameter Real cytosol.vldh.kia = 0.00245;
// parameter Real cytosol.vldh.kmb = 0.137;
// parameter Real cytosol.vldh.kip = 7.3;
// parameter Real cytosol.vldh.kmq = 0.1;
// parameter Real cytosol.vldh.kiq = 0.5;
// parameter Real cytosol.vldh.k1ib = 0.1;
// parameter Real cytosol.vldh.kmp = 1.0;
// parameter Real cytosol.vldh.kma = 0.00844;
// parameter Real cytosol.vldh.kib = 0.228;
// parameter Real cytosol.vldh.kf = 458.0;
// parameter Real cytosol.vldh.kr = 135.0;
// parameter Real cytosol.vldh.e0 = 8.0;
// Real cytosol.vpdh.rr(quantity = \"Reaction rate\", unit = \"mol/s\") \"Rate of the reaction\";
// Real cytosol.vpdh.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.vpdh.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.vpdh.s1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.vpdh.s2.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.vpdh.s2.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.vpdh.s2.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.vpdh.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.vpdh.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.vpdh.p1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.vpdh.nS1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for substrate 1\";
// Real cytosol.vpdh.nS2(quantity = \"Stoichiometric coefficient\", unit = \"1\") = cytosol.cytosol_V / cytosol.vpdh.badp \"Stoichiometric coefficient for substrate 2\";
// Real cytosol.vpdh.nP1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 3.67 \"Stoichiometric coefficient for the product\";
// Real cytosol.vpdh.m1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.vpdh.m1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.vpdh.m1.V(quantity = \"Volume\", unit = \"l\");
// parameter Real cytosol.vpdh.KmPYR = 0.5;
// parameter Real cytosol.vpdh.KcatPDH = 1.0;
// Real cytosol.vpdh.badp = cytosol.badp;
// Real cytosol.jak.rr(quantity = \"Reaction rate\", unit = \"mol/s\") \"Rate of the reaction\";
// Real cytosol.jak.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.jak.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.jak.s1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.jak.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.jak.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.jak.p1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.jak.nS1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = cytosol.cytosol_V / cytosol.jak.bamp \"Stoichiometric coefficient for the substrate\";
// Real cytosol.jak.nP1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 2.0 * cytosol.cytosol_V / cytosol.jak.badp \"Stoichiometric coefficient for the product\";
// Real cytosol.jak.m1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.jak.m1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.jak.m1.V(quantity = \"Volume\", unit = \"l\");
// parameter Real cytosol.jak.KcatAK = 150000.0;
// Real cytosol.jak.bamp = cytosol.bamp;
// Real cytosol.jak.badp = cytosol.badp;
// Real cytosol.vgph.rr(quantity = \"Reaction rate\", unit = \"mol/s\") \"Rate of the reaction\";
// Real cytosol.vgph.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.vgph.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.vgph.s1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.vgph.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.vgph.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.vgph.p1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.vgph.nS1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the substrate\";
// Real cytosol.vgph.nP1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the product\";
// parameter Integer cytosol.vgph.dimM = 3 \"number of modifiers\";
// Real cytosol.vgph.m[1].c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.vgph.m[1].r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.vgph.m[1].V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.vgph.m[2].c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.vgph.m[2].r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.vgph.m[2].V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.vgph.m[3].c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.vgph.m[3].r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.vgph.m[3].V(quantity = \"Volume\", unit = \"l\");
// parameter Real cytosol.vgph.kh = cytosol.kh;
// parameter Real cytosol.vgph.KcatGPH = 248.0;
// Real cytosol.vgph.bamp = cytosol.bamp;
// Real cytosol.jatpase.rr(quantity = \"Reaction rate\", unit = \"mol/s\") \"Rate of the reaction\";
// Real cytosol.jatpase.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.jatpase.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.jatpase.s1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.jatpase.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.jatpase.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.jatpase.p1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.jatpase.nS1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the substrate\";
// Real cytosol.jatpase.nP1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = cytosol.cytosol_V / cytosol.jatpase.badp \"Stoichiometric coefficient for the product\";
// parameter Real cytosol.jatpase.KcatATPase = 370.0 \"I am unsure about this value\";
// Real cytosol.jatpase.badp = cytosol.badp;
// Real cytosol.jck.rr(quantity = \"Reaction rate\", unit = \"mol/s\") \"Rate of the reaction\";
// Real cytosol.jck.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.jck.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.jck.s1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.jck.s2.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.jck.s2.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.jck.s2.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.jck.p2.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.jck.p2.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.jck.p2.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.jck.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.jck.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.jck.p1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.jck.nS1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for substrate 1\";
// Real cytosol.jck.nS2(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for substrate 2\";
// Real cytosol.jck.nP1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = cytosol.cytosol_V / cytosol.jck.badp \"Stoichiometric coefficient for product 1\";
// Real cytosol.jck.nP2(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for product 2\";
// parameter Real cytosol.jck.KcatCK = 1970.0;
// Real cytosol.jck.badp = cytosol.badp;
// Real cytosol.node_LAC.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.node_LAC.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.node_LAC.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.mitochondria.V(quantity = \"Volume\", unit = \"l\", start = 2.0, stateSelect = StateSelect.prefer) \"Compartment volume\";
// Real cytosol.mitochondria.NADHm.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0, start = 0.0, stateSelect = StateSelect.prefer) \"Current concentration of substance (mM)\";
// Real cytosol.mitochondria.NADHm.rNet(quantity = \"Molar flow rate\", unit = \"mol/s\") \"Net flow rate of substance into the node\";
// Real cytosol.mitochondria.NADHm.n(quantity = \"AmountOfSubstance\", unit = \"mol\", min = 0.0, stateSelect = StateSelect.prefer) \"Number of moles of substance in pool (mol)\";
// Real cytosol.mitochondria.NADHm.n1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.mitochondria.NADHm.n1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.mitochondria.NADHm.n1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.mitochondria.NADm.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0, start = 0.0, stateSelect = StateSelect.prefer) \"Current concentration of substance (mM)\";
// Real cytosol.mitochondria.NADm.rNet(quantity = \"Molar flow rate\", unit = \"mol/s\") \"Net flow rate of substance into the node\";
// Real cytosol.mitochondria.NADm.n(quantity = \"AmountOfSubstance\", unit = \"mol\", min = 0.0, stateSelect = StateSelect.prefer) \"Number of moles of substance in pool (mol)\";
// Real cytosol.mitochondria.NADm.n1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.mitochondria.NADm.n1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.mitochondria.NADm.n1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.mitochondria.jox.rr(quantity = \"Reaction rate\", unit = \"mol/s\") \"Rate of the reaction\";
// Real cytosol.mitochondria.jox.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.mitochondria.jox.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.mitochondria.jox.s1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.mitochondria.jox.s2.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.mitochondria.jox.s2.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.mitochondria.jox.s2.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.mitochondria.jox.p2.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.mitochondria.jox.p2.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.mitochondria.jox.p2.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.mitochondria.jox.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.mitochondria.jox.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.mitochondria.jox.p1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.mitochondria.jox.nS1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 2.5 * cytosol.cytosol_V / cytosol.mitochondria.jox.badp \"Stoichiometric coefficient for substrate 1\";
// Real cytosol.mitochondria.jox.nS2(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for substrate 2\";
// Real cytosol.mitochondria.jox.nP1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for product 1\";
// Real cytosol.mitochondria.jox.nP2(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for product 2\";
// Real cytosol.mitochondria.jox.badp = cytosol.mitochondria.badp;
// Real cytosol.mitochondria.node_ADP.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.mitochondria.node_ADP.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.mitochondria.node_ADP.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.mitochondria.node_NADHm.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.mitochondria.node_NADHm.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.mitochondria.node_NADHm.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.mitochondria.vn.rr(quantity = \"Reaction rate\", unit = \"mol/s\") \"Rate of the reaction\";
// Real cytosol.mitochondria.vn.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.mitochondria.vn.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.mitochondria.vn.s1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.mitochondria.vn.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.mitochondria.vn.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.mitochondria.vn.p1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.mitochondria.vn.nS1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the substrate\";
// Real cytosol.mitochondria.vn.nP1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the product\";
// parameter Real cytosol.mitochondria.vn.VmaxN = 10.8347;
// parameter Real cytosol.mitochondria.vn.KmNADH = 0.216694;
// Real cytosol.mitochondria.node_NADH.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.mitochondria.node_NADH.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.mitochondria.node_NADH.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.mitochondria.node_ATP.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.mitochondria.node_ATP.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.mitochondria.node_ATP.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.mitochondria.badp = cytosol.badp;
// Real cytosol.bamp = bamp;
// Real cytosol.badp = badp;
// Real cytosol.pn = pn;
// Real cytosol.atp = atp;
// Real cytosol.cr = cr;
// Real cytosol.nad = nad;
// parameter Real cytosol.kh = kh;
// parameter Real cytosol.kt = kt;
// Real cytosol.vH6P.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.vH6P.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.vH6P.s1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.vH6P.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.vH6P.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.vH6P.p1.V(quantity = \"Volume\", unit = \"l\");
// parameter Real cytosol.vH6P.kS1(quantity = \"Equilibrium coefficient\", unit = \"1\") = 1.0 \"Equilibrium coefficient for the substrate\";
// parameter Real cytosol.vH6P.kP1(quantity = \"Equilibrium coefficient\", unit = \"1\") = cytosol.kh \"Equilibrium coefficient for the product\";
// Real cytosol.vald.rr(quantity = \"Reaction rate\", unit = \"mol/s\") \"Rate of the reaction\";
// Real cytosol.vald.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.vald.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.vald.s1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.vald.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.vald.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.vald.p1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.vald.nS1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the substrate\";
// Real cytosol.vald.nP1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 2.0 \"Stoichiometric coefficient for the product\";
// parameter Real cytosol.vald.kt = cytosol.kt;
// parameter Real cytosol.vald.ka1 = 0.01;
// parameter Real cytosol.vald.ka2 = 1.65;
// parameter Real cytosol.vald.ka3 = 3000.0;
// parameter Real cytosol.vald.ka4 = 0.125;
// parameter Real cytosol.vald.ka5 = 340.0;
// parameter Real cytosol.vald.ka6 = 14000000.0;
// parameter Real cytosol.vald.ka7 = 56000.0;
// Real cytosol.DHAP.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0, start = 0.07427 / (1.0 + cytosol.kt), stateSelect = StateSelect.prefer) \"Current concentration of substance (mM)\";
// Real cytosol.DHAP.rNet(quantity = \"Molar flow rate\", unit = \"mol/s\") \"Net flow rate of substance into the node\";
// Real cytosol.DHAP.n(quantity = \"AmountOfSubstance\", unit = \"mol\", min = 0.0, stateSelect = StateSelect.prefer) \"Number of moles of substance in pool (mol)\";
// Real cytosol.DHAP.n1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.DHAP.n1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.DHAP.n1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.G3P.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0, start = 0.07427 * cytosol.kt / (1.0 + cytosol.kt), stateSelect = StateSelect.prefer) \"Current concentration of substance (mM)\";
// Real cytosol.G3P.rNet(quantity = \"Molar flow rate\", unit = \"mol/s\") \"Net flow rate of substance into the node\";
// Real cytosol.G3P.n(quantity = \"AmountOfSubstance\", unit = \"mol\", min = 0.0, stateSelect = StateSelect.prefer) \"Number of moles of substance in pool (mol)\";
// Real cytosol.G3P.n1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.G3P.n1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.G3P.n1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.vgpdh_1.rr(quantity = \"Reaction rate\", unit = \"mol/s\") \"Rate of the reaction\";
// Real cytosol.vgpdh_1.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.vgpdh_1.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.vgpdh_1.s1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.vgpdh_1.s2.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.vgpdh_1.s2.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.vgpdh_1.s2.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.vgpdh_1.p2.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.vgpdh_1.p2.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.vgpdh_1.p2.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.vgpdh_1.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.vgpdh_1.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.vgpdh_1.p1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.vgpdh_1.nS1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 2.0 * cytosol.cytosol_V / cytosol.vgpdh_1.badp \"Stoichiometric coefficient for substrate 1\";
// Real cytosol.vgpdh_1.nS2(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for substrate 2\";
// Real cytosol.vgpdh_1.nP1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for product 1\";
// Real cytosol.vgpdh_1.nP2(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for product 2\";
// Real cytosol.vgpdh_1.m1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.vgpdh_1.m1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.vgpdh_1.m1.V(quantity = \"Volume\", unit = \"l\");
// parameter Real cytosol.vgpdh_1.KcatGPDH = 78595.60000000001;
// parameter Real cytosol.vgpdh_1.KmGPDH = 0.0369;
// parameter Real cytosol.vgpdh_1.KmADP = 1.4;
// parameter Real cytosol.vgpdh_1.KmPN = 120.0;
// Real cytosol.vgpdh_1.badp = cytosol.badp;
// Real cytosol.vT3P.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.vT3P.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.vT3P.s1.V(quantity = \"Volume\", unit = \"l\");
// Real cytosol.vT3P.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real cytosol.vT3P.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real cytosol.vT3P.p1.V(quantity = \"Volume\", unit = \"l\");
// parameter Real cytosol.vT3P.kS1(quantity = \"Equilibrium coefficient\", unit = \"1\") = 1.0 \"Equilibrium coefficient for the substrate\";
// parameter Real cytosol.vT3P.kP1(quantity = \"Equilibrium coefficient\", unit = \"1\") = cytosol.kt \"Equilibrium coefficient for the product\";
// Real vef.rr(quantity = \"Reaction rate\", unit = \"mol/s\") \"Rate of the reaction\";
// Real vef.s1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real vef.s1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real vef.s1.V(quantity = \"Volume\", unit = \"l\");
// Real vef.p1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real vef.p1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real vef.p1.V(quantity = \"Volume\", unit = \"l\");
// Real vef.nS1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the substrate\";
// Real vef.nP1(quantity = \"Stoichiometric coefficient\", unit = \"1\") = 1.0 \"Stoichiometric coefficient for the product\";
// parameter Real vef.VmaxEF = 15.0;
// parameter Real vef.KmLAC = 26.8483;
// Real LACext.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0, start = 0.0, stateSelect = StateSelect.prefer) \"Current concentration of substance (mM)\";
// Real LACext.rNet(quantity = \"Molar flow rate\", unit = \"mol/s\") \"Net flow rate of substance into the node\";
// Real LACext.n(quantity = \"AmountOfSubstance\", unit = \"mol\", min = 0.0, stateSelect = StateSelect.prefer) \"Number of moles of substance in pool (mol)\";
// Real LACext.n1.c(quantity = \"Concentration\", unit = \"mol/l\", min = 0.0);
// Real LACext.n1.r(quantity = \"Molar flow rate\", unit = \"mol/s\");
// Real LACext.n1.V(quantity = \"Volume\", unit = \"l\");
// Real default_V = V \"Variable used to make the compartment volume accessible for inner components. Do not edit.\";
// Real cytosol_V = cytosol.V \"Variable used to make the compartment volume of inner compartments accessible. Do not edit.\";
// parameter Real iv1 = 0.603855;
// parameter Real iv2 = 0.0999758;
// parameter Real iv3 = 0.07427;
// parameter Real iv4 = 0.148871;
// parameter Real iv5 = 4.34299;
// parameter Real iv6 = 0.00406177;
// parameter Real iv7 = 1.72073e-05;
// parameter Real iv8 = 0.0695775;
// parameter Real iv9 = 28.2621;