Work on PDE extension proposal.

git-svn-id: https://openmodelica.org/svn/OpenModelica/trunk/doc@20773 f25d12d1-65f4-0310-ae8a-bbce733d8d8e

PDEInModelica/doc/bibliography.bib

@@ -24,6 +24,36 @@ @ARTICLE{alastrueyarterial
   title = {Arterial pulse wave haemodynamics}
 }
 
+@ARTICLE{hiflow3,
+  author = {Anzt, Hartwig and Augustin, Werner and Baumann, Martin and Bockelmann,
+	Hendryk and Gengenbach, Thomas and Hahn, Tobias and Heuveline, Vincent
+	and Ketelaer, Eva and Lukarski, Dimitar and Otzen, Andrea and others},
+  title = {HiFlow3--A Flexible and Hardware-Aware Parallel Finite Element Package},
+  journal = {Preprint Series of the Engineering Mathematics and Computing Lab},
+  year = {2013},
+  number = {06}
+}
+
+@BOOK{arnez2003simulations,
+  title = {Simulations in Biomedicine V: },
+  publisher = {WIT Press},
+  year = {2003},
+  author = {Arnez, Z.M. and Brebbia, C.A. and Solina, F. and Stankovski, V.},
+  series = {WIT Transactions on Biomedicine and Health},
+  isbn = {9781853129650},
+  lccn = {2003279424},
+  url = {http://books.google.cz/books?id=NZ7CAQAAQBAJ}
+}
+
+@MISC{Modelica3.3Spec,
+  author = {Modelica Association},
+  title = {Modelica Specification, version 3.3},
+  howpublished = {\\https://www.modelica.org/documents/ModelicaSpec33.pdf},
+  owner = {janek},
+  quality = {1},
+  timestamp = {2014.02.25}
+}
+
 @MASTERSTHESIS{PDELib,
   author = {Farid Dshabarow},
   title = {Support for Dymola in the Modeling and Simulation of Physical Systems
@@ -36,7 +66,7 @@ @MASTERSTHESIS{PDELib
 }
 
 @BOOK{fritzson2010principles,
-  title = {Principles of object-oriented modeling and simulation with Modelica
+  title = {Principles of Object-Oriented Modeling and Simulation with Modelica
 	2.1},
   publisher = {Wiley-IEEE Press},
   year = {2004},
@@ -65,6 +95,53 @@ @ARTICLE{gosling2003terminology
   publisher = {Am Heart Assoc}
 }
 
+@BOOK{guccione2010computational,
+  title = {Computational Cardiovascular Mechanics: Modeling and Applications
+	in Heart Failure},
+  publisher = {Springer},
+  year = {2010},
+  author = {Guccione, J.M. and Kassab, G. and Ratcliffe, M.},
+  isbn = {9781441907301},
+  url = {http://books.google.cz/books?id=l1u\_8qMhAx4C}
+}
+
+@ARTICLE{Horacek,
+  author = {J. Horacek and P. Sidlof and J.G. Svec},
+  title = {Numerical simulation of self-oscillations of human vocal folds with
+	Hertz model of impact forces },
+  journal = {Journal of Fluids and Structures },
+  year = {2005},
+  volume = {20},
+  pages = {853 - 869},
+  number = {6},
+  note = {Axial-Flow Fluid-Structure Interactions Axial-Flow Fluid-Structure
+	Interactions },
+  doi = {http://dx.doi.org/10.1016/j.jfluidstructs.2005.05.003},
+  issn = {0889-9746},
+  keywords = {Flow induced vibrations},
+  url = {http://www.sciencedirect.com/science/article/pii/S0889974605000642}
+}
+
+@BOOK{de1995ventilation,
+  title = {Ventilation Modelling of the Human Lung},
+  publisher = {Delft University of Technology, Faculty of Aerospace Engineering},
+  year = {1995},
+  author = {de Jongh, F.H.C.},
+  isbn = {9789056230142},
+  url = {http://books.google.cz/books?id=E60cAAAACAAJ}
+}
+
+@BOOK{keener2009mathematical,
+  title = {Mathematical Physiology},
+  publisher = {Springer},
+  year = {2009},
+  author = {Keener, J.P. and Sneyd, J.},
+  series = {Interdisciplinary Applied Mathematics},
+  isbn = {9780387758466},
+  lccn = {98014499},
+  url = {http://books.google.cz/books?id=HIkZ3QHbpTQC}
+}
+
 @TECHREPORT{MaplePDE,
   author = {Samir Khan},
   title = {Discretizing pdes for maplesim},
@@ -75,19 +152,46 @@ @TECHREPORT{MaplePDE
   timestamp = {2013.11.06}
 }
 
+@ARTICLE{kofranek2011hummod,
+  author = {Kofranek, Jiri and Matejak, Marek and Privitzer, Pavol},
+  title = {Hummod-large scale physiological models in modelica},
+  year = {2011},
+  publisher = {Citeseer}
+}
+
+@ARTICLE{kofranek2011atlas,
+  author = {Kofranek, Jiri and Matousek, Stanislav and Rusz, Jan and Stodulka,
+	Petr and Privitzer, Pavol and Matejak, Marek and Tribula, Martin},
+  title = {The Atlas of Physiology and Pathophysiology: Web-based multimedia
+	enabled interactive simulations},
+  journal = {Computer methods and programs in biomedicine},
+  year = {2011},
+  volume = {104},
+  pages = {143--153},
+  number = {2},
+  publisher = {Elsevier}
+}
+
 @ARTICLE{PeripheralArterial,
-  author = {Lang, Roberto M.; Cholley, Bernard P.; Korcarz, Claudia; Marcus,
-	Richard H.; Shroff, Sanjeev G.},
-  title = {Peripheral Arterial and Aortic Diseases: Measurement of Regional
-	Elastic Properties of the Human Aorta: A New Application of Transesophageal
-	Echocardiography With Automated Border Detection and Calibrated Subclavian
-	Pulse Tracings},
-  journal = {OvidSP},
+  author = {Lang, Roberto M and Cholley, Bernard P and Korcarz, Claudia and Marcus,
+	Richard H and Shroff, Sanjeev G},
+  title = {Measurement of regional elastic properties of the human aorta. A
+	new application of transesophageal echocardiography with automated
+	border detection and calibrated subclavian pulse tracings.},
+  journal = {Circulation},
   year = {1994},
-  volume = {90(4)},
-  owner = {janeks},
-  timestamp = {2013.06.12},
-  url = {http://ovidsp.tx.ovid.com/sp-3.8.1a/ovidweb.cgi?QS2=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}
+  volume = {90},
+  pages = {1875--1882},
+  number = {4},
+  publisher = {Am Heart Assoc}
+}
+
+@ARTICLE{layton1991bifurcation,
+  author = {Layton, HE and Pitman, E BRUCE and Moore, LEON C},
+  title = {Bifurcation analysis of TGF-mediated oscillations in SNGFR},
+  journal = {Amer. J. Physiol},
+  year = {1991},
+  volume = {261}
 }
 
 @BOOK{leveque2007finite,
@@ -141,6 +245,17 @@ @ARTICLE{martinson2000differentiation
   publisher = {SIAM}
 }
 
+@BOOK{murray2003mathematical,
+  title = {Mathematical Biology II: Spatial Models and Biomedical Applications},
+  publisher = {Springer},
+  year = {2003},
+  author = {Murray, J.D.},
+  series = {Intercisciplinary Applied Mathematics: Mathematical Biology},
+  isbn = {9780387952284},
+  lccn = {2001020448},
+  url = {http://books.google.cz/books?id=Dk8pFkP2cKYC}
+}
+
 @PHDTHESIS{saldamli2006pdemodelica,
   author = {Saldamli, Levon},
   title = {A High-Level Language for Modeling with Partial Differential Equations},
@@ -176,6 +291,13 @@ @ARTICLE{sherwin2003one
   publisher = {Springer}
 }
 
+@BOOK{sneyd2008mathematical,
+  title = {Mathematical physiology},
+  publisher = {Springer-Verlag New York},
+  year = {2008},
+  author = {Sneyd, James and Keener, James}
+}
+
 @ARTICLE{PDEModelingHiFlow3,
   author = {Kristian Stav{\aa}ker and Staffan Ronn{\aa}s and Martin Wlotzka and
 	Vincent Heuveline and Peter Fritzson},
@@ -208,6 +330,19 @@ @MISC{KristiansSlides
   timestamp = {2013.08.06}
 }
 
+@ARTICLE{vazquez2011massively,
+  author = {V{\'a}zquez, M and Ar{\'\i}s, R and Houzeaux, G and Aubry, R and
+	Villar, P and Garcia-Barn{\'e}s, J and Gil, D and Carreras, F},
+  title = {A massively parallel computational electrophysiology model of the
+	heart},
+  journal = {International Journal for Numerical Methods in Biomedical Engineering},
+  year = {2011},
+  volume = {27},
+  pages = {1911--1929},
+  number = {12},
+  publisher = {Wiley Online Library}
+}
+
 @ARTICLE{voelcker1977constructive,
   author = {Voelcker, Herbert and Requicha, Aristides},
   title = {Constructive solid geometry},
@@ -255,7 +390,7 @@ @MISC{blood-viscosity
 
 @MISC{hagen-poiseuille,
   author = {Wikipedia},
-  title = {Hagen–Poiseuille equation},
+  title = {Hagen--Poiseuille equation},
   note = {http://en.wikipedia.org/wiki/Hagen%E2%80%93Poiseuille_equation},
   owner = {Jan},
   timestamp = {2013.09.20}