All notable changes to this project will be documented in this file.
The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.
- Created scaffold from nanite for building the pipeline
- Rapidly builds a phylogentic tree for a set of targeted ONT monkeypox samples data using porechop, minimap2, viral_consensus, mafft, and raxml-ng. Additional monkeypox strains can be added to the tree, via the
--additional-strainsoption. The--batch-idoption can be provided to ensure unique output files are not over-written between runs of the pipeline. When this option is provided, a sub-directory is created in the project folder for writing project-level output files, i.e{output_directory}/project/{batch_id}.