/
muscle_model.xml
163 lines (162 loc) · 8.3 KB
/
muscle_model.xml
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<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
<!--
This file has been automatically generated from data extracted from OSB project: muscle_model
Generated on Tue Mar 2 09:31:34 2021
Structure of this file subject to change without notice!!
Contact P Gleeson for more details
-->
<rdf:Description rdf:about="muscle_model">
<bqmodel:is>
<rdf:Bag>
<!-- Open Source Brain project identifier: muscle_model -->
<rdf:li rdf:resource="https://www.opensourcebrain.org/projects/muscle_model"/>
</rdf:Bag>
</bqmodel:is>
<bqbiol:hasTaxon>
<rdf:Bag>
<!-- OSB species: c. elegans; taxonomy id: 6239 -->
<rdf:li rdf:resource="http://identifiers.org/taxonomy/6239"/>
</rdf:Bag>
</bqbiol:hasTaxon>
</rdf:Description>
<rdf:Description rdf:about="NeuroML2/CaPool.nml">
<!-- NeuroML 2 file: NeuroML2/CaPool.nml (at https://github.com/openworm/muscle_model/raw/master/NeuroML2/CaPool.nml)
A simple decaying Ca pool. Not appropriate for muscle model? Needs replacing! -->
<bqmodel:is>
<rdf:Bag>
<rdf:li rdf:resource="https://github.com/openworm/muscle_model/raw/master/NeuroML2/CaPool.nml"/>
</rdf:Bag>
</bqmodel:is>
</rdf:Description>
<rdf:Description rdf:about="NeuroML2/Figure2A.net.nml">
<!-- NeuroML 2 file: NeuroML2/Figure2A.net.nml (at https://github.com/openworm/muscle_model/raw/master/NeuroML2/Figure2A.net.nml) -->
<bqmodel:is>
<rdf:Bag>
<rdf:li rdf:resource="https://github.com/openworm/muscle_model/raw/master/NeuroML2/Figure2A.net.nml"/>
</rdf:Bag>
</bqmodel:is>
</rdf:Description>
<rdf:Description rdf:about="NeuroML2/Figure2B.net.nml">
<!-- NeuroML 2 file: NeuroML2/Figure2B.net.nml (at https://github.com/openworm/muscle_model/raw/master/NeuroML2/Figure2B.net.nml) -->
<bqmodel:is>
<rdf:Bag>
<rdf:li rdf:resource="https://github.com/openworm/muscle_model/raw/master/NeuroML2/Figure2B.net.nml"/>
</rdf:Bag>
</bqmodel:is>
</rdf:Description>
<rdf:Description rdf:about="NeuroML2/Leak.channel.nml">
<!-- NeuroML 2 file: NeuroML2/Leak.channel.nml (at https://github.com/openworm/muscle_model/raw/master/NeuroML2/Leak.channel.nml)
ChannelML file containing a single Channel description for a passive leak conductance -->
<bqmodel:is>
<rdf:Bag>
<rdf:li rdf:resource="https://github.com/openworm/muscle_model/raw/master/NeuroML2/Leak.channel.nml"/>
</rdf:Bag>
</bqmodel:is>
<bqbiol:is>
<rdf:Bag>
<!-- It is a model of the GO entity: ion channel complex (species through ion channel: None) -->
<rdf:li rdf:resource="http://identifiers.org/go/GO:0034702"/>
</rdf:Bag>
</bqbiol:is>
<bqbiol:hasProperty>
<rdf:Bag>
<!-- It is of type: ionic current model (CNO ID: cno_0000047) -->
<rdf:li rdf:resource="http://purl.org/incf/ontology/Computational_Neurosciences/cno_alpha.owl#cno_0000047"/>
</rdf:Bag>
</bqbiol:hasProperty>
</rdf:Description>
<rdf:Description rdf:about="NeuroML2/MuscleStim.net.nml">
<!-- NeuroML 2 file: NeuroML2/MuscleStim.net.nml (at https://github.com/openworm/muscle_model/raw/master/NeuroML2/MuscleStim.net.nml) -->
<bqmodel:is>
<rdf:Bag>
<rdf:li rdf:resource="https://github.com/openworm/muscle_model/raw/master/NeuroML2/MuscleStim.net.nml"/>
</rdf:Bag>
</bqmodel:is>
</rdf:Description>
<rdf:Description rdf:about="NeuroML2/NeuronMuscle.net.nml">
<!-- NeuroML 2 file: NeuroML2/NeuronMuscle.net.nml (at https://github.com/openworm/muscle_model/raw/master/NeuroML2/NeuronMuscle.net.nml) -->
<bqmodel:is>
<rdf:Bag>
<rdf:li rdf:resource="https://github.com/openworm/muscle_model/raw/master/NeuroML2/NeuronMuscle.net.nml"/>
</rdf:Bag>
</bqmodel:is>
</rdf:Description>
<rdf:Description rdf:about="NeuroML2/SingleCompMuscle.cell.nml">
<!-- NeuroML 2 file: NeuroML2/SingleCompMuscle.cell.nml (at https://github.com/openworm/muscle_model/raw/master/NeuroML2/SingleCompMuscle.cell.nml)
Cell: SingleCompMuscleCell; Only muscle cell body... -->
<bqmodel:is>
<rdf:Bag>
<rdf:li rdf:resource="https://github.com/openworm/muscle_model/raw/master/NeuroML2/SingleCompMuscle.cell.nml"/>
</rdf:Bag>
</bqmodel:is>
<bqbiol:hasProperty>
<rdf:Bag>
<!-- It is of type: biophysical spiking model (CNO ID: cno_0000017) -->
<rdf:li rdf:resource="http://purl.org/incf/ontology/Computational_Neurosciences/cno_alpha.owl#cno_0000017"/>
</rdf:Bag>
</bqbiol:hasProperty>
</rdf:Description>
<rdf:Description rdf:about="NeuroML2/ca_boyle.channel.nml">
<!-- NeuroML 2 file: NeuroML2/ca_boyle.channel.nml (at https://github.com/openworm/muscle_model/raw/master/NeuroML2/ca_boyle.channel.nml)
Ion Channel: ca_boyle; Ca channel from Boyle and Cohen 2008 -->
<bqmodel:is>
<rdf:Bag>
<rdf:li rdf:resource="https://github.com/openworm/muscle_model/raw/master/NeuroML2/ca_boyle.channel.nml"/>
</rdf:Bag>
</bqmodel:is>
<bqbiol:is>
<rdf:Bag>
<!-- It is a model of the GO entity: calcium channel complex (species through ion channel: ca) -->
<rdf:li rdf:resource="http://identifiers.org/go/GO:0034704"/>
</rdf:Bag>
</bqbiol:is>
<bqbiol:hasProperty>
<rdf:Bag>
<!-- It is of type: ionic current model (CNO ID: cno_0000047) -->
<rdf:li rdf:resource="http://purl.org/incf/ontology/Computational_Neurosciences/cno_alpha.owl#cno_0000047"/>
</rdf:Bag>
</bqbiol:hasProperty>
</rdf:Description>
<rdf:Description rdf:about="NeuroML2/k_fast.channel.nml">
<!-- NeuroML 2 file: NeuroML2/k_fast.channel.nml (at https://github.com/openworm/muscle_model/raw/master/NeuroML2/k_fast.channel.nml)
Ion Channel: k_fast; K fast channel from Boyle and Cohen 2008 -->
<bqmodel:is>
<rdf:Bag>
<rdf:li rdf:resource="https://github.com/openworm/muscle_model/raw/master/NeuroML2/k_fast.channel.nml"/>
</rdf:Bag>
</bqmodel:is>
<bqbiol:is>
<rdf:Bag>
<!-- It is a model of the GO entity: potassium channel complex (species through ion channel: k) -->
<rdf:li rdf:resource="http://identifiers.org/go/GO:0034705"/>
</rdf:Bag>
</bqbiol:is>
<bqbiol:hasProperty>
<rdf:Bag>
<!-- It is of type: ionic current model (CNO ID: cno_0000047) -->
<rdf:li rdf:resource="http://purl.org/incf/ontology/Computational_Neurosciences/cno_alpha.owl#cno_0000047"/>
</rdf:Bag>
</bqbiol:hasProperty>
</rdf:Description>
<rdf:Description rdf:about="NeuroML2/k_slow.channel.nml">
<!-- NeuroML 2 file: NeuroML2/k_slow.channel.nml (at https://github.com/openworm/muscle_model/raw/master/NeuroML2/k_slow.channel.nml)
Ion Channel: k_slow; K slow channel from Boyle and Cohen 2008 -->
<bqmodel:is>
<rdf:Bag>
<rdf:li rdf:resource="https://github.com/openworm/muscle_model/raw/master/NeuroML2/k_slow.channel.nml"/>
</rdf:Bag>
</bqmodel:is>
<bqbiol:is>
<rdf:Bag>
<!-- It is a model of the GO entity: potassium channel complex (species through ion channel: k) -->
<rdf:li rdf:resource="http://identifiers.org/go/GO:0034705"/>
</rdf:Bag>
</bqbiol:is>
<bqbiol:hasProperty>
<rdf:Bag>
<!-- It is of type: ionic current model (CNO ID: cno_0000047) -->
<rdf:li rdf:resource="http://purl.org/incf/ontology/Computational_Neurosciences/cno_alpha.owl#cno_0000047"/>
</rdf:Bag>
</bqbiol:hasProperty>
</rdf:Description>
</rdf:RDF>