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cmor_CV.c
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cmor_CV.c
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#define _XOPEN_SOURCE
#define _GNU_SOURCE
#include <string.h>
#include <time.h>
#include <regex.h>
#include "cmor.h"
#include <json-c/json.h>
#include <json-c/json_tokener.h>
#include <json-c/arraylist.h>
#include "libgen.h"
#include "math.h"
#ifndef REG_NOERROR
#define REG_NOERROR 0
#endif
extern void cdCompAdd(cdCompTime comptime,
double value, cdCalenType calendar, cdCompTime * result);
extern void cdCompAddMixed(cdCompTime ct, double value, cdCompTime * result);
/************************************************************************/
/* cmor_CV_set_att() */
/************************************************************************/
void cmor_CV_set_att(cmor_CV_def_t * CV, char *szKey, json_object * joValue)
{
json_bool bValue;
double dValue;
int nValue;
array_list *pArray;
int k, length;
strcpy(CV->key, szKey);
if (json_object_is_type(joValue, json_type_null)) {
printf("Will not save NULL JSON type from CV.json\n");
} else if (json_object_is_type(joValue, json_type_boolean)) {
bValue = json_object_get_boolean(joValue);
CV->nValue = (int)bValue;
CV->type = CV_integer;
} else if (json_object_is_type(joValue, json_type_double)) {
dValue = json_object_get_double(joValue);
CV->dValue = dValue;
CV->type = CV_double;
} else if (json_object_is_type(joValue, json_type_int)) {
nValue = json_object_get_int(joValue);
CV->nValue = nValue;
CV->type = CV_integer;
/* -------------------------------------------------------------------- */
/* if value is a JSON object, recursively call in this function */
/* -------------------------------------------------------------------- */
} else if (json_object_is_type(joValue, json_type_object)) {
int nCVId = -1;
int nbObject = 0;
cmor_CV_def_t *oValue;
int nTableID = CV->table_id; /* Save Table ID */
json_object_object_foreach(joValue, key, value) {
nbObject++;
oValue = (cmor_CV_def_t *) realloc(CV->oValue,
sizeof(cmor_CV_def_t) *
nbObject);
CV->oValue = oValue;
nCVId++;
cmor_CV_init(&CV->oValue[nCVId], nTableID);
cmor_CV_set_att(&CV->oValue[nCVId], key, value);
}
CV->nbObjects = nbObject;
CV->type = CV_object;
} else if (json_object_is_type(joValue, json_type_array)) {
int i;
pArray = json_object_get_array(joValue);
length = array_list_length(pArray);
CV->aszValue = (char **) malloc(length * sizeof(char**));
for(i=0; i < length; i++) {
CV->aszValue[i] = (char *) malloc(sizeof(char) * CMOR_MAX_STRING);
}
json_object *joItem;
CV->anElements = length;
for (k = 0; k < length; k++) {
joItem = (json_object *) array_list_get_idx(pArray, k);
strcpy(CV->aszValue[k], json_object_get_string(joItem));
}
CV->type = CV_stringarray;
} else if (json_object_is_type(joValue, json_type_string)) {
strcpy(CV->szValue, json_object_get_string(joValue));
CV->type = CV_string;
}
}
/************************************************************************/
/* cmor_CV_init() */
/************************************************************************/
void cmor_CV_init(cmor_CV_def_t * CV, int table_id)
{
cmor_is_setup();
cmor_add_traceback("_init_CV_def");
CV->table_id = table_id;
CV->type = CV_undef; //undefined
CV->nbObjects = -1;
CV->nValue = -1;
CV->key[0] = '\0';
CV->szValue[0] = '\0';
CV->dValue = -9999.9;
CV->oValue = NULL;
CV->aszValue = NULL;
CV->anElements = -1;
cmor_pop_traceback();
}
/************************************************************************/
/* cmor_CV_print() */
/************************************************************************/
void cmor_CV_print(cmor_CV_def_t * CV)
{
int k;
if (CV != NULL) {
if (CV->key[0] != '\0') {
printf("key: %s \n", CV->key);
} else {
return;
}
switch (CV->type) {
case CV_string:
printf("value: %s\n", CV->szValue);
break;
case CV_integer:
printf("value: %d\n", CV->nValue);
break;
case CV_stringarray:
printf("value: [\n");
for (k = 0; k < CV->anElements; k++) {
printf("value: %s\n", CV->aszValue[k]);
}
printf(" ]\n");
break;
case CV_double:
printf("value: %lf\n", CV->dValue);
break;
case CV_object:
printf("*** nbObjects=%d\n", CV->nbObjects);
for (k = 0; k < CV->nbObjects; k++) {
cmor_CV_print(&CV->oValue[k]);
}
break;
case CV_undef:
break;
}
}
}
/************************************************************************/
/* cmor_CV_printall() */
/************************************************************************/
void cmor_CV_printall()
{
int j, i;
cmor_CV_def_t *CV;
int nCVs;
/* -------------------------------------------------------------------- */
/* Parse tree and print key values. */
/* -------------------------------------------------------------------- */
for (i = 0; i < CMOR_MAX_TABLES; i++) {
if (cmor_tables[i].CV != NULL) {
printf("table %s\n", cmor_tables[i].szTable_id);
nCVs = cmor_tables[i].CV->nbObjects;
for (j = 0; j <= nCVs; j++) {
CV = &cmor_tables[i].CV[j];
cmor_CV_print(CV);
}
}
}
}
/************************************************************************/
/* cmor_CV_set_dataset_attr_from_key() */
/************************************************************************/
cmor_CV_def_t *cmor_CV_set_dataset_attr_from_key(cmor_CV_def_t * CV,
char *key)
{
int i;
cmor_CV_def_t *searchCV;
int nbCVs = -1;
cmor_add_traceback("_CV_search_child_key");
nbCVs = CV->nbObjects;
// Look at this objects
if (strcmp(CV->key, key) == 0) {
cmor_pop_traceback();
return (CV);
}
// Look at each of object key
for (i = 0; i < nbCVs; i++) {
// Is there a branch on that object?
if (&CV->oValue[i] != NULL) {
searchCV = cmor_CV_set_dataset_attr_from_key(&CV->oValue[i], key);
if (searchCV != NULL) {
cmor_pop_traceback();
return (searchCV);
}
}
}
cmor_pop_traceback();
return (NULL);
}
/************************************************************************/
/* cmor_CV_search_child_key() */
/************************************************************************/
cmor_CV_def_t *cmor_CV_search_child_key(cmor_CV_def_t * CV, char *key)
{
int i;
cmor_CV_def_t *searchCV;
int nbCVs = -1;
cmor_add_traceback("_CV_search_child_key");
nbCVs = CV->nbObjects;
// Look at this objects
if (strcmp(CV->key, key) == 0) {
cmor_pop_traceback();
return (CV);
}
// Look at each of object key
for (i = 0; i < nbCVs; i++) {
// Is there a branch on that object?
if (&CV->oValue[i] != NULL) {
searchCV = cmor_CV_search_child_key(&CV->oValue[i], key);
if (searchCV != NULL) {
cmor_pop_traceback();
return (searchCV);
}
}
}
cmor_pop_traceback();
return (NULL);
}
/************************************************************************/
/* cmor_CV_rootsearch() */
/************************************************************************/
cmor_CV_def_t *cmor_CV_rootsearch(cmor_CV_def_t * CV, char *key)
{
int i;
int nbCVs = -1;
cmor_add_traceback("_CV_rootsearch");
// Look at first objects
if (strcmp(CV->key, key) == 0) {
cmor_pop_traceback();
return (CV);
}
// Is there more than 1 object?
if (CV->nbObjects != -1) {
nbCVs = CV->nbObjects;
}
// Look at each of object key
for (i = 1; i < nbCVs; i++) {
if (strcmp(CV[i].key, key) == 0) {
cmor_pop_traceback();
return (&CV[i]);
}
}
cmor_pop_traceback();
return (NULL);
}
/************************************************************************/
/* cmor_CV_get_value() */
/************************************************************************/
char *cmor_CV_get_value(cmor_CV_def_t * CV, char *key)
{
switch (CV->type) {
case CV_string:
return (CV->szValue);
break;
case CV_integer:
sprintf(CV->szValue, "%d", CV->nValue);
break;
case CV_stringarray:
return (CV->aszValue[0]);
break;
case CV_double:
sprintf(CV->szValue, "%lf", CV->dValue);
break;
case CV_object:
return (NULL);
break;
case CV_undef:
CV->szValue[0] = '\0';
break;
}
return (CV->szValue);
}
/************************************************************************/
/* cmor_CV_free() */
/************************************************************************/
void cmor_CV_free(cmor_CV_def_t * CV)
{
int k;
int i;
int length;
/* -------------------------------------------------------------------- */
/* Free allocated double string array */
/* -------------------------------------------------------------------- */
length = CV->anElements;
if(length != 0) {
for(i=0; i < length; i++) {
free(CV->aszValue[i]);
}
free(CV->aszValue);
}
/* -------------------------------------------------------------------- */
/* Recursively go down the tree and free branch */
/* -------------------------------------------------------------------- */
if (CV->oValue != NULL) {
for (k = 0; k < CV->nbObjects; k++) {
cmor_CV_free(&CV->oValue[k]);
}
free(CV->oValue);
CV->oValue = NULL;
}
}
/************************************************************************/
/* cmor_CV_checkFurtherInfoURL() */
/************************************************************************/
int cmor_CV_checkFurtherInfoURL(int nVarRefTblID)
{
char szFurtherInfoURLTemplate[CMOR_MAX_STRING];
char szFurtherInfoURL[CMOR_MAX_STRING];
char copyURL[CMOR_MAX_STRING];
char szFurtherInfoBaseURL[CMOR_MAX_STRING];
char szFurtherInfoFileURL[CMOR_MAX_STRING];
char szValue[CMOR_MAX_STRING];
char msg[CMOR_MAX_STRING];
char CV_Filename[CMOR_MAX_STRING];
char *baseURL;
char *fileURL;
char *szToken;
szFurtherInfoURL[0] = '\0';
szFurtherInfoFileURL[0] = '\0';
szFurtherInfoBaseURL[0] = '\0';
cmor_is_setup();
cmor_add_traceback("_CV_checkFurtherInfoURL");
/* -------------------------------------------------------------------- */
/* Retrieve default Further URL info */
/* -------------------------------------------------------------------- */
strncpy(szFurtherInfoURLTemplate, cmor_current_dataset.furtherinfourl,
CMOR_MAX_STRING);
/* -------------------------------------------------------------------- */
/* If this is a string with no token we have nothing to do. */
/* -------------------------------------------------------------------- */
szToken = strtok(szFurtherInfoURLTemplate, "<>");
if (strcmp(szToken, cmor_current_dataset.furtherinfourl) == 0) {
return (0);
}
strncpy(szFurtherInfoURLTemplate, cmor_current_dataset.furtherinfourl,
CMOR_MAX_STRING);
/* -------------------------------------------------------------------- */
/* Separate path template from file template. */
/* -------------------------------------------------------------------- */
strcpy(copyURL, szFurtherInfoURLTemplate);
baseURL = dirname(copyURL);
cmor_CreateFromTemplate(nVarRefTblID, baseURL, szFurtherInfoBaseURL, "/");
strcpy(copyURL, szFurtherInfoURLTemplate);
fileURL = basename(copyURL);
cmor_CreateFromTemplate(nVarRefTblID, fileURL, szFurtherInfoFileURL, ".");
strncpy(szFurtherInfoURL, szFurtherInfoBaseURL, CMOR_MAX_STRING);
strcat(szFurtherInfoURL, "/");
strncat(szFurtherInfoURL, szFurtherInfoFileURL,
strlen(szFurtherInfoFileURL));
if (cmor_has_cur_dataset_attribute(GLOBAL_ATT_FURTHERINFOURL) == 0) {
cmor_get_cur_dataset_attribute(GLOBAL_ATT_FURTHERINFOURL, szValue);
if (strncmp(szFurtherInfoURL, szValue, CMOR_MAX_STRING) != 0) {
cmor_get_cur_dataset_attribute(CV_INPUTFILENAME, CV_Filename);
snprintf(msg, CMOR_MAX_STRING,
"The further info in attribute does not match "
"the one found in your Control Vocabulary(CV) File. \n! "
"We found \"%s\" and \n! "
"CV requires \"%s\" \n! "
"Check your Control Vocabulary file \"%s\".\n! ",
szValue, szFurtherInfoURL, CV_Filename);
cmor_handle_error(msg, CMOR_WARNING);
cmor_pop_traceback();
return (-1);
}
}
cmor_set_cur_dataset_attribute_internal(GLOBAL_ATT_FURTHERINFOURL,
szFurtherInfoURL, 0);
cmor_pop_traceback();
return (0);
}
/************************************************************************/
/* get_CV_Error() */
/************************************************************************/
int get_CV_Error()
{
return (CV_ERROR);
}
/************************************************************************/
/* cmor_CV_checkSourceType() */
/************************************************************************/
int cmor_CV_checkSourceType(cmor_CV_def_t * CV_exp, char *szExptID)
{
int nObjects;
cmor_CV_def_t *CV_exp_attr;
char szAddSourceType[CMOR_MAX_STRING];
char szReqSourceType[CMOR_MAX_STRING];
char szAddSourceTypeCpy[CMOR_MAX_STRING];
char szReqSourceTypeCpy[CMOR_MAX_STRING];
char szSourceType[CMOR_MAX_STRING];
char msg[CMOR_MAX_STRING];
char CV_Filename[CMOR_MAX_STRING];
int i, j;
char *szTokenRequired;
char *szTokenAdd;
int nbSourceType;
char *ptr;
int nbGoodType;
regex_t regex;
int reti;
cmor_add_traceback("_CV_checkSourceType");
szAddSourceType[0] = '\0';
szReqSourceType[0] = '\0';
szAddSourceTypeCpy[0] = '\0';
szReqSourceTypeCpy[0] = '\0';
szSourceType[0] = '\0';
nbGoodType = 0;
nbSourceType = -1;
cmor_get_cur_dataset_attribute(CV_INPUTFILENAME, CV_Filename);
szAddSourceType[0] = '\0';
nObjects = CV_exp->nbObjects;
// Parse all experiment attributes get source type related attr.
for (i = 0; i < nObjects; i++) {
CV_exp_attr = &CV_exp->oValue[i];
if (strcmp(CV_exp_attr->key, CV_EXP_ATTR_ADDSOURCETYPE) == 0) {
for (j = 0; j < CV_exp_attr->anElements; j++) {
strcat(szAddSourceType, CV_exp_attr->aszValue[j]);
strcat(szAddSourceType, " ");
strcat(szAddSourceTypeCpy, CV_exp_attr->aszValue[j]);
strcat(szAddSourceTypeCpy, " ");
}
continue;
}
if (strcmp(CV_exp_attr->key, CV_EXP_ATTR_REQSOURCETYPE) == 0) {
for (j = 0; j < CV_exp_attr->anElements; j++) {
strcat(szReqSourceType, CV_exp_attr->aszValue[j]);
strcat(szReqSourceType, " ");
strcat(szReqSourceTypeCpy, CV_exp_attr->aszValue[j]);
strcat(szReqSourceTypeCpy, " ");
}
continue;
}
}
if (cmor_has_cur_dataset_attribute(GLOBAL_ATT_SOURCE_TYPE) == 0) {
cmor_get_cur_dataset_attribute(GLOBAL_ATT_SOURCE_TYPE, szSourceType);
// Count how many are token we have.
ptr = szSourceType;
if (szSourceType[0] != '\0') {
nbSourceType = 1;
} else {
cmor_pop_traceback();
return (-1);
}
while ((ptr = strpbrk(ptr, " ")) != NULL) {
nbSourceType++;
ptr++;
}
}
szTokenRequired = strtok(szReqSourceType, " ");
while (szTokenRequired != NULL) {
reti = regcomp(®ex, szTokenRequired, REG_EXTENDED);
if (reti) {
snprintf(msg, CMOR_MAX_STRING,
"You regular expression \"%s\" is invalid. \n! "
"Please refer to the CMIP6 documentations.\n! ",
szTokenRequired);
regfree(®ex);
cmor_handle_error(msg, CMOR_NORMAL);
cmor_pop_traceback();
return (-1);
}
/* -------------------------------------------------------------------- */
/* Execute regular expression */
/* -------------------------------------------------------------------- */
reti = regexec(®ex, szSourceType, 0, NULL, 0);
if (reti == REG_NOMATCH) {
snprintf(msg, CMOR_MAX_STRING,
"The following source type(s) \"%s\" are required and\n! "
"some source type(s) could not be found in your "
"input file. \n! "
"Your file contains a source type of \"%s\".\n! "
"Check your Control Vocabulary file \"%s\".\n! ",
szReqSourceTypeCpy, szSourceType, CV_Filename);
regfree(®ex);
cmor_handle_error(msg, CMOR_NORMAL);
} else {
nbGoodType++;
}
regfree(®ex);
szTokenRequired = strtok(NULL, " ");
}
szTokenAdd = strtok(szAddSourceType, " ");
while (szTokenAdd != NULL) {
// Is the token "CHEM"?
if (strcmp(szTokenAdd, "CHEM") == 0) {
reti = regcomp(®ex, szTokenAdd, REG_EXTENDED);
if (regexec(®ex, szSourceType, 0, NULL, 0) == REG_NOERROR) {
nbGoodType++;
};
} else if (strcmp(szTokenAdd, "AER") == 0) {
regfree(®ex);
// Is the token "AER"?
reti = regcomp(®ex, szTokenAdd, REG_EXTENDED);
if (regexec(®ex, szSourceType, 0, NULL, 0) == REG_NOERROR) {
nbGoodType++;
};
} else {
regfree(®ex);
// Is the token in the list of AddSourceType?
reti = regcomp(®ex, szTokenAdd, REG_EXTENDED);
if (regexec(®ex, szSourceType, 0, NULL, 0) == REG_NOERROR) {
nbGoodType++;
};
}
szTokenAdd = strtok(NULL, " ");
regfree(®ex);
}
if (nbGoodType != nbSourceType) {
snprintf(msg, CMOR_MAX_STRING,
"You source_type attribute contains invalid source types\n! "
"Your source type is set to \"%s\". The required source types\n! "
"are \"%s\" and possible additional source types are \"%s\" \n! "
"Check your Control Vocabulary file \"%s\".\n! ",
szSourceType, szReqSourceTypeCpy, szAddSourceTypeCpy,
CV_Filename);
cmor_handle_error(msg, CMOR_NORMAL);
cmor_pop_traceback();
return (-1);
}
cmor_pop_traceback();
return (0);
}
/************************************************************************/
/* cmor_CV_checkSourceID() */
/************************************************************************/
int cmor_CV_checkSourceID(cmor_CV_def_t * CV)
{
cmor_CV_def_t *CV_source_ids;
cmor_CV_def_t *CV_source_id = NULL;
char szSource_ID[CMOR_MAX_STRING];
char szSource[CMOR_MAX_STRING];
char szSubstring[CMOR_MAX_STRING];
char *pos;
int nLen;
char msg[CMOR_MAX_STRING];
char CV_Filename[CMOR_MAX_STRING];
char CMOR_Filename[CMOR_MAX_STRING];
int rc;
int i;
int j = 0;
cmor_is_setup();
cmor_add_traceback("_CV_checkSourceID");
cmor_get_cur_dataset_attribute(CV_INPUTFILENAME, CV_Filename);
rc = cmor_has_cur_dataset_attribute(CMOR_INPUTFILENAME);
if (rc == 0) {
cmor_get_cur_dataset_attribute(CMOR_INPUTFILENAME, CMOR_Filename);
} else {
CMOR_Filename[0] = '\0';
}
/* -------------------------------------------------------------------- */
/* Find experiment_ids dictionary in Control Vocabulary */
/* -------------------------------------------------------------------- */
CV_source_ids = cmor_CV_rootsearch(CV, CV_KEY_SOURCE_IDS);
if (CV_source_ids == NULL) {
snprintf(msg, CMOR_MAX_STRING,
"Your \"source_ids\" key could not be found in\n! "
"your Control Vocabulary file.(%s)\n! ", CV_Filename);
cmor_handle_error(msg, CMOR_NORMAL);
cmor_pop_traceback();
return (-1);
}
// retrieve source_id
rc = cmor_get_cur_dataset_attribute(GLOBAL_ATT_SOURCE_ID, szSource_ID);
if (rc != 0) {
snprintf(msg, CMOR_MAX_STRING,
"Your \"%s\" is not defined, check your required attributes\n! "
"See Control Vocabulary JSON file.(%s)\n! ",
GLOBAL_ATT_SOURCE_ID, CV_Filename);
cmor_handle_error(msg, CMOR_NORMAL);
cmor_pop_traceback();
return (-1);
}
// Validate source_id
for (i = 0; i < CV_source_ids->nbObjects; i++) {
CV_source_id = &CV_source_ids->oValue[i];
if (strncmp(CV_source_id->key, szSource_ID, CMOR_MAX_STRING) == 0) {
// Make sure that "source" exist.
if (cmor_has_cur_dataset_attribute(GLOBAL_ATT_SOURCE) != 0) {
cmor_set_cur_dataset_attribute_internal(GLOBAL_ATT_SOURCE,
CV_source_id->szValue, 1);
}
// Check source with experiment_id label.
rc = cmor_get_cur_dataset_attribute(GLOBAL_ATT_SOURCE, szSource);
if(CV_source_id->nbObjects < 1) {
snprintf(msg, CMOR_MAX_STRING,
"You did not define a %s section in your source_id %s.\n! \n! \n! "
"See Control Vocabulary JSON file. (%s)\n! ",
CV_KEY_SOURCE_LABEL, szSource_ID, CV_Filename);
cmor_handle_error(msg, CMOR_CRITICAL);
return(-1);
}
for (j = 0; j < CV_source_id->nbObjects; j++) {
if (strcmp(CV_source_id->oValue[j].key, CV_KEY_SOURCE_LABEL) ==
0) {
break;
}
}
if (j == CV_source_id->nbObjects) {
snprintf(msg, CMOR_MAX_STRING,
"Could not find %s string in source_id section.\n! \n! \n! "
"See Control Vocabulary JSON file. (%s)\n! ",
CV_KEY_SOURCE_LABEL, CV_Filename);
cmor_handle_error(msg, CMOR_CRITICAL);
return(-1);
}
pos = strchr(CV_source_id->oValue[j].szValue, ')');
strncpy(szSubstring, CV_source_id->oValue[j].szValue,
CMOR_MAX_STRING);
nLen = strlen(CV_source_id->oValue[j].szValue);
if (pos != 0) {
nLen = pos - CV_source_id->oValue[j].szValue + 1;
}
szSubstring[nLen] = '\0';
if (strncmp(szSubstring, szSource, nLen) != 0) {
snprintf(msg, CMOR_MAX_STRING,
"Your input attribute \"%s\" with value \n! \"%s\" "
"will be replaced with "
"value \n! \"%s\".\n! \n! \n! "
"See Control Vocabulary JSON file.(%s)\n! ",
GLOBAL_ATT_SOURCE, szSource,
CV_source_id->oValue[j].szValue, CV_Filename);
cmor_handle_error(msg, CMOR_WARNING);
}
break;
}
}
// We could not found the Source ID in the CV file
if (i == CV_source_ids->nbObjects) {
snprintf(msg, CMOR_MAX_STRING,
"The source_id, \"%s\", found in your \n! "
"input file (%s) could not be found in \n! "
"your Controlled Vocabulary file. (%s) \n! \n! "
"Please correct your input file by using a valid source_id listed in your MIP tables' CV file.\n! "
"To add a new source_id to the %s file, open a new issue in the\n! "
"table's Github repository. Managed project CMOR and MIP tables are listed at\n! "
"https://wcrp-cmip.github.io/WGCM_Infrastructure_Panel/cmor_and_mip_tables.html. \n! "
"Contact \"pcmdi-cmip@llnl.gov\" for additional guidance. \n! \n! "
"See \"http://cmor.llnl.gov/mydoc_cmor3_CV/\" for further information about\n! "
"the \"source_id\" and \"source\" global attributes. ",
szSource_ID, CMOR_Filename, CV_Filename, CV_Filename);
cmor_handle_error(msg, CMOR_NORMAL);
cmor_pop_traceback();
return (-1);
}
// Set/replace attribute.
cmor_set_cur_dataset_attribute_internal(GLOBAL_ATT_SOURCE_ID,
CV_source_id->key, 1);
cmor_set_cur_dataset_attribute_internal(GLOBAL_ATT_SOURCE,
CV_source_id->oValue[j].szValue, 1);
cmor_pop_traceback();
return (0);
}
/************************************************************************/
/* CV_VerifyNBElement() */
/************************************************************************/
int CV_VerifyNBElement(cmor_CV_def_t * CV)
{
char msg[CMOR_MAX_STRING];
char CV_Filename[CMOR_MAX_STRING];
cmor_get_cur_dataset_attribute(CV_INPUTFILENAME, CV_Filename);
cmor_add_traceback("_CV_VerifyNBElement");
// printf("**** CV->key: %s\n", CV->key);
// printf("**** CV->anElement: %d\n", CV->anElements);
// printf("**** CV->asValue: %s\n", CV->aszValue[0]);
// printf("**** CV->szValue: %s\n", CV->szValue);
if (CV->anElements > 1) {
snprintf(msg, CMOR_MAX_STRING,
"Your %s has more than 1 element\n! "
"only the first one will be used\n! "
"Check your Control Vocabulary file \"%s\".\n! ",
CV->key, CV_Filename);
cmor_handle_error(msg, CMOR_NORMAL);
cmor_pop_traceback();
return (-1);
} else if (CV->anElements == -1) {
snprintf(msg, CMOR_MAX_STRING,
"Your %s has more than 0 element\n! "
"Check your Control Vocabulary file \"%s\".\n! ",
CV->key, CV_Filename);
cmor_handle_error(msg, CMOR_NORMAL);
cmor_pop_traceback();
return (-1);
}
cmor_pop_traceback();
return (0);
}
/************************************************************************/
/* CV_CompareNoParent() */
/************************************************************************/
int CV_CompareNoParent(char *szKey)
{
char msg[CMOR_MAX_STRING];
char szValue[CMOR_MAX_STRING];
cmor_add_traceback("_CV_CompareNoParent");
if (cmor_has_cur_dataset_attribute(szKey) == 0) {
cmor_get_cur_dataset_attribute(szKey, szValue);
if (strcmp(szValue, NO_PARENT) != 0) {
snprintf(msg, CMOR_MAX_STRING,
"Your input attribute %s with value \"%s\" \n! "
"will be replaced with value \"%s\".\n! ", szKey,
szValue, NO_PARENT);
cmor_set_cur_dataset_attribute_internal(szKey, NO_PARENT, 1);
cmor_handle_error(msg, CMOR_WARNING);
}
}
cmor_pop_traceback();
return (0);
}
/************************************************************************/
/* InArray() */
/************************************************************************/
int CV_IsStringInArray(cmor_CV_def_t * CV, char *szValue)
{
int nElements;
int i;
int found = 0;
cmor_add_traceback("_CV_InArray");
nElements = CV->anElements;
for (i = 0; i < nElements; i++) {
if (strcmp(CV->aszValue[i], szValue) == 0) {
found = 1;
break;
}
}
cmor_pop_traceback();
return (found);
}
/************************************************************************/
/* cmor_CV_checkSubExpID() */
/************************************************************************/
int cmor_CV_checkSubExpID(cmor_CV_def_t * CV)
{
cmor_CV_def_t *CV_experiment_id;
cmor_CV_def_t *CV_experiment;
cmor_CV_def_t *CV_experiment_sub_exp_id;
cmor_CV_def_t *CV_sub_experiment_id;
cmor_CV_def_t *CV_sub_experiment_id_key;
char szExperiment_ID[CMOR_MAX_STRING];
char CV_Filename[CMOR_MAX_STRING];
char szSubExptID[CMOR_MAX_STRING];
char szValue[CMOR_MAX_STRING];
char szVariant[CMOR_MAX_STRING];
char msg[CMOR_MAX_STRING];
int ierr = 0;
cmor_add_traceback("_CV_checkSubExperiment");
// Initialize variables
cmor_get_cur_dataset_attribute(CV_INPUTFILENAME, CV_Filename);
ierr = cmor_get_cur_dataset_attribute(GLOBAL_ATT_EXPERIMENTID, szExperiment_ID);
if (ierr != 0) {
snprintf(msg, CMOR_MAX_STRING,
"Your \"%s\" is not defined, check your required attributes\n! "
"See Control Vocabulary JSON file.(%s)\n! ",
GLOBAL_ATT_EXPERIMENTID, CV_Filename);
cmor_handle_error(msg, CMOR_NORMAL);
cmor_pop_traceback();
return (-1);
}
// Look for sub_experiment_id section
CV_sub_experiment_id = cmor_CV_rootsearch(CV, CV_KEY_SUB_EXPERIMENT_ID);
if (CV_sub_experiment_id == NULL) {
snprintf(msg, CMOR_MAX_STRING,
"Your \"sub_experiment_id\" key could not be found in\n! "
"your Control Vocabulary file.(%s)\n! ", CV_Filename);
cmor_handle_error(msg, CMOR_NORMAL);
cmor_pop_traceback();
return (-1);
}
// Look for experiment_id section
CV_experiment_id = cmor_CV_rootsearch(CV, CV_KEY_EXPERIMENT_ID);
if (CV_experiment_id == NULL) {
snprintf(msg, CMOR_MAX_STRING,
"Your \"experiment_id\" key could not be found in\n! "
"your Control Vocabulary file.(%s)\n! ", CV_Filename);
cmor_handle_error(msg, CMOR_NORMAL);
cmor_pop_traceback();
return (-1);
}
// Get specified experiment
CV_experiment = cmor_CV_search_child_key(CV_experiment_id, szExperiment_ID);
if (CV_experiment == NULL) {
snprintf(msg, CMOR_MAX_STRING,
"Your experiment_id \"%s\" defined in your input file\n! "
"could not be found in your Control Vocabulary file.(%s)\n! ",
szExperiment_ID, CV_Filename);
cmor_handle_error(msg, CMOR_NORMAL);
cmor_pop_traceback();
return (-1);
}
// sub_experiment_id
CV_experiment_sub_exp_id = cmor_CV_search_child_key(CV_experiment,
GLOBAL_ATT_SUB_EXPT_ID);
if (CV_experiment_sub_exp_id == NULL) {
snprintf(msg, CMOR_MAX_STRING,
"Your \"%s\" defined in your input file\n! "
"could not be found in your Control Vocabulary file.(%s)\n! ",
GLOBAL_ATT_SUB_EXPT_ID, CV_Filename);
cmor_handle_error(msg, CMOR_NORMAL);
cmor_pop_traceback();
return (-1);
}
// Check sub_experiment_id value
if (cmor_has_cur_dataset_attribute(GLOBAL_ATT_SUB_EXPT_ID) != 0) {
// sub_experiment_id not found and set to "none"
if (CV_IsStringInArray(CV_experiment_sub_exp_id, NONE)) {
snprintf(msg, CMOR_MAX_STRING,
"Your input attribute \"%s\" was not defined and \n! "
"will be set to \"%s\"\n! "
"as defined in your Control Vocabulary file \"%s\".\n! ",
GLOBAL_ATT_SUB_EXPT_ID, NONE, CV_Filename);
cmor_handle_error(msg, CMOR_WARNING);
cmor_set_cur_dataset_attribute_internal(GLOBAL_ATT_SUB_EXPT_ID,
NONE, 1);
} else {
// can't be "none".
snprintf(msg, CMOR_MAX_STRING,
"Your input attribute \"%s\" is not defined properly \n! "
"for your experiment \"%s\" \n! \n! "
"See Control Vocabulary JSON file.(%s)\n! ",
GLOBAL_ATT_SUB_EXPT_ID, szExperiment_ID, CV_Filename);
cmor_handle_error(msg, CMOR_NORMAL);
cmor_pop_traceback();
return (-1);
}
} else {
// sub_experiment_id has been defined!
cmor_get_cur_dataset_attribute(GLOBAL_ATT_SUB_EXPT_ID, szSubExptID);
// cannot be found in CV
if (!CV_IsStringInArray(CV_experiment_sub_exp_id, szSubExptID)) {
// only 1 element in list set it!
if (CV_experiment_sub_exp_id->anElements == 1) {
snprintf(msg, CMOR_MAX_STRING,
"Your input attribute \"%s\" defined as \"%s\" "
"will be replaced with \n! "
"\"%s\" as defined in your Control Vocabulary file.\n! ",
GLOBAL_ATT_SUB_EXPT_ID, szSubExptID,
CV_experiment_sub_exp_id->aszValue[0]);
cmor_handle_error(msg, CMOR_WARNING);
cmor_set_cur_dataset_attribute_internal(GLOBAL_ATT_SUB_EXPT_ID,
CV_experiment_sub_exp_id->aszValue
[0], 1);
} else {
// too many options.
snprintf(msg, CMOR_MAX_STRING,
"Your input attribute \"%s\" is not defined properly \n! "
"for your experiment \"%s\"\n! "
"There is more than 1 option for this sub_experiment.\n! "
"See Control Vocabulary JSON file.(%s)\n! ",
GLOBAL_ATT_SUB_EXPT_ID, szExperiment_ID, CV_Filename);
cmor_handle_error(msg, CMOR_NORMAL);
cmor_pop_traceback();
return (-1);
}
}
}
// sub_experiment has not been defined!
if (cmor_has_cur_dataset_attribute(GLOBAL_ATT_SUB_EXPT) != 0) {
snprintf(msg, CMOR_MAX_STRING,
"Your input attribute \"%s\" was not defined and \n! "
"will be set to \"%s\" \n! "
"as defined in your Control Vocabulary file \"%s\".\n! ",
GLOBAL_ATT_SUB_EXPT, NONE, CV_Filename);
cmor_handle_error(msg, CMOR_WARNING);
cmor_set_cur_dataset_attribute_internal(GLOBAL_ATT_SUB_EXPT, NONE, 1);
} else {
cmor_get_cur_dataset_attribute(GLOBAL_ATT_SUB_EXPT, szValue);
CV_sub_experiment_id_key =
cmor_CV_search_child_key(CV_sub_experiment_id, szSubExptID);
if (CV_sub_experiment_id_key == NULL) {
snprintf(msg, CMOR_MAX_STRING,
"Your \"sub_experiment\" text describing \n! "
"sub_experiment_id \"%s\" could not be found in \n! "
"your Control Vocabulary file.(%s)\n! ", szSubExptID,
CV_Filename);
cmor_handle_error(msg, CMOR_NORMAL);
cmor_pop_traceback();
return (-1);
}
if (strcmp(szValue, CV_sub_experiment_id_key->szValue) != 0) {
snprintf(msg, CMOR_MAX_STRING,
"Your input attribute \"%s\" defined as \"%s\" "
"will be replaced with \n! "
"\"%s\" as defined in your Control Vocabulary file.\n! ",
GLOBAL_ATT_SUB_EXPT, szValue,
CV_sub_experiment_id_key->szValue);
cmor_handle_error(msg, CMOR_WARNING);
cmor_set_cur_dataset_attribute_internal(GLOBAL_ATT_SUB_EXPT,
CV_sub_experiment_id_key->szValue,
1);
}
}
// append sub-experiment_id
if (cmor_has_cur_dataset_attribute(GLOBAL_ATT_SUB_EXPT_ID) == 0) {
cmor_get_cur_dataset_attribute(GLOBAL_ATT_SUB_EXPT_ID, szValue);
cmor_get_cur_dataset_attribute(GLOBAL_ATT_MEMBER_ID, szVariant);
if (strcmp(szValue, NONE) != 0) {
// not already in variant
if (strstr(szVariant, szValue) == NULL) {
strcat(szValue, "-");
strcat(szValue, szVariant);
cmor_set_cur_dataset_attribute_internal(GLOBAL_ATT_MEMBER_ID,
szValue, 1);
}