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Update Learn Apply Output #114

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jjacobson95 opened this issue Aug 3, 2023 · 0 comments
Open

Update Learn Apply Output #114

jjacobson95 opened this issue Aug 3, 2023 · 0 comments

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@jjacobson95
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Include the function description of the predicted annotation in output. This would make it more user friendly and intuitive.
Are there any other desired additions to this output? GO terms?

Current
index, Prediction, Score, delta, confidence

Update to:
Index, Score, Delta, Confidence,Prediction, Description

This would require the addition of description to the annotation file which is currently in the format:
Uniprot accession ID , TIGRFAMS ID

Other considerations:

  • Include annotation files for TIGRFAMS, Panther, PFam, etc in repo for user ease of use.
  • Include a parameter in the config file to pick which annotation type to use. Then query this from Uniprot API.

Small additional note - also remove quotes from output.

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