/
pom.xml
438 lines (408 loc) · 16 KB
/
pom.xml
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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>org.hupo.psi.mi.psicquic</groupId>
<artifactId>psicquic-solr</artifactId>
<packaging>jar</packaging>
<version>1.5.1</version>
<name>PSI :: PSICQUIC Solr</name>
<scm>
<connection>scm:git:https://github.com/PSICQUIC/psicquic-solr</connection>
<developerConnection>scm:git:https://github.com/PSICQUIC/psicquic-solr</developerConnection>
<url>https://github.com/PSICQUIC/psicquic-solr</url>
<tag>HEAD</tag>
</scm>
<properties>
<solr.url>http://127.0.0.1:8983/solr</solr.url>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<calimocho.version>2.6.2</calimocho.version>
<psimi.version>1.10.1</psimi.version>
<spring.version>4.3.30.RELEASE</spring.version>
<spring.batch.version>3.0.10.RELEASE</spring.batch.version>
</properties>
<build>
<finalName>${project.artifactId}-${project.version}</finalName>
<resources>
<resource>
<directory>src/main/resources</directory>
<filtering>false</filtering>
</resource>
</resources>
<plugins>
<plugin>
<!--mvn jgitflow:release-start -Dgit.user=xxxx -Dgit.password=xxxx-->
<!--mvn jgitflow:release-finish -Dmaven.javadoc.skip=true -Dgit.user=xxxx -Dgit.password=xxxx-->
<groupId>external.atlassian.jgitflow</groupId>
<artifactId>jgitflow-maven-plugin</artifactId>
<version>1.0-m5.1</version>
<configuration>
<flowInitContext>
<masterBranchName>master</masterBranchName>
<developBranchName>develop</developBranchName>
<featureBranchPrefix>feature-</featureBranchPrefix>
<releaseBranchPrefix>release-</releaseBranchPrefix>
<hotfixBranchPrefix>hotfix-</hotfixBranchPrefix>
<versionTagPrefix>${project.artifactId}-</versionTagPrefix>
</flowInitContext>
<!-- see goals wiki page for configuration options -->
<!--Whether to allow untracked files when checking if the working tree is clean.-->
<allowUntracked>true</allowUntracked>
<username>${git.user}</username>
<password>${git.password}</password>
<pullMaster>true</pullMaster>
<pullDevelop>true</pullDevelop>
<pushReleases>true</pushReleases>
<pushHotfixes>true</pushHotfixes>
<pushFeatures>true</pushFeatures>
</configuration>
</plugin>
<plugin>
<artifactId>maven-source-plugin</artifactId>
<version>3.0.1</version>
<executions>
<execution>
<id>attach-source</id>
<goals>
<goal>jar</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-javadoc-plugin</artifactId>
<version>3.2.0</version>
<executions>
<execution>
<id>attach-javadocs</id>
<goals>
<goal>jar</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.10.1</version>
<configuration>
<source>11</source>
<target>11</target>
</configuration>
</plugin>
</plugins>
</build>
<profiles>
<profile>
<id>exec</id>
<build>
<plugins>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>exec-maven-plugin</artifactId>
<executions>
<execution>
<phase>install</phase>
<goals>
<goal>exec</goal>
</goals>
</execution>
</executions>
<configuration>
<executable>java</executable>
<arguments>
<argument>-Xmx2024m</argument>
<argument>-Xms256m</argument>
<argument>-classpath</argument>
<classpath />
<argument>org.hupo.psi.mi.psicquic.indexing.batch.SolrMitabIndexer</argument>
</arguments>
</configuration>
</plugin>
</plugins>
</build>
</profile>
<profile>
<id>resume</id>
<build>
<plugins>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>exec-maven-plugin</artifactId>
<executions>
<execution>
<phase>install</phase>
<goals>
<goal>exec</goal>
</goals>
</execution>
</executions>
<configuration>
<executable>java</executable>
<arguments>
<argument>-Xmx2024m</argument>
<argument>-classpath</argument>
<classpath />
<argument>org.hupo.psi.mi.psicquic.indexing.batch.SolrMitabIndexer</argument>
<argument>${indexing.id}</argument>
</arguments>
</configuration>
</plugin>
</plugins>
</build>
</profile>
</profiles>
<dependencyManagement>
<dependencies>
<!--Spring-->
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-jdbc</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-beans</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-context</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-oxm</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-aspects</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>org.springframework.batch</groupId>
<artifactId>spring-batch-core</artifactId>
<version>3.0.10.RELEASE</version>
</dependency>
</dependencies>
</dependencyManagement>
<dependencies>
<!-- PSIMI -->
<dependency>
<groupId>psidev.psi.mi</groupId>
<artifactId>psimitab</artifactId>
<version>${psimi.version}</version>
<exclusions>
<exclusion>
<groupId>org.apache.commons</groupId>
<artifactId>com.springsource.org.apache.commons.io</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>psidev.psi.mi</groupId>
<artifactId>psi25-xml</artifactId>
<version>${psimi.version}</version>
<exclusions>
<exclusion>
<groupId>org.apache.commons</groupId>
<artifactId>com.springsource.org.apache.commons.io</artifactId>
</exclusion>
<exclusion>
<groupId>woodstox</groupId>
<artifactId>wstx-asl</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>psidev.psi.mi</groupId>
<artifactId>psi25-xml-rdf</artifactId>
<version>${psimi.version}</version>
<exclusions>
<exclusion>
<groupId>woodstox</groupId>
<artifactId>wstx-asl</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>psidev.psi.mi</groupId>
<artifactId>calimocho-solr</artifactId>
<version>${calimocho.version}</version>
</dependency>
<dependency>
<groupId>psidev.psi.mi</groupId>
<artifactId>calimocho-tab</artifactId>
<version>${calimocho.version}</version>
</dependency>
<dependency>
<groupId>psidev.psi.mi</groupId>
<artifactId>calimocho-xgmml</artifactId>
<version>${calimocho.version}</version>
</dependency>
<!-- Jetty -->
<dependency>
<groupId>org.mortbay.jetty</groupId>
<artifactId>jetty</artifactId>
<version>6.1.26</version>
</dependency>
<dependency>
<groupId>org.mortbay.jetty</groupId>
<artifactId>jetty-util</artifactId>
<version>6.1.26</version>
</dependency>
<dependency>
<groupId>org.mortbay.jetty</groupId>
<artifactId>jsp-2.1</artifactId>
<version>6.1.14</version>
<optional>true</optional>
</dependency>
<!-- Apache Solr -->
<dependency>
<groupId>org.apache.solr</groupId>
<artifactId>solr-core</artifactId>
<version>3.6.2</version>
<type>jar</type>
<scope>compile</scope>
<exclusions>
<exclusion>
<groupId>org.codehaus.woodstox</groupId>
<artifactId>org.codehaus.woodstox</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.apache.solr</groupId>
<artifactId>solr-solrj</artifactId>
<version>3.6.2</version>
<type>jar</type>
<scope>compile</scope>
</dependency>
<!-- Logging -->
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
<version>1.6.6</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-log4j12</artifactId>
<version>1.6.6</version>
<optional>false</optional>
</dependency>
<dependency>
<groupId>com.h2database</groupId>
<artifactId>h2</artifactId>
<version>1.4.197</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-jdbc</artifactId>
<version>${spring.version}</version>
</dependency>
<!-- Commons -->
<dependency>
<groupId>commons-io</groupId>
<artifactId>commons-io</artifactId>
<version>2.4</version>
</dependency>
<dependency>
<groupId>commons-dbcp</groupId>
<artifactId>commons-dbcp</artifactId>
<version>1.4</version>
</dependency>
<dependency>
<groupId>org.springframework.batch</groupId>
<artifactId>spring-batch-core</artifactId>
<version>${spring.batch.version}</version>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.13.2</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-test</artifactId>
<version>${spring.version}</version>
<scope>test</scope>
<optional>true</optional>
<exclusions>
<exclusion>
<groupId>commons-logging</groupId>
<artifactId>commons-logging</artifactId>
</exclusion>
</exclusions>
</dependency>
<!-- json parser -->
<dependency>
<groupId>org.json</groupId>
<artifactId>json</artifactId>
<version>20220320</version>
</dependency>
<dependency>
<groupId>org.apache.httpcomponents</groupId>
<artifactId>httpclient</artifactId>
<version>4.3.6</version>
<!-- HttpSolrServer requires this dependency. -->
<exclusions>
<exclusion>
<groupId>commons-logging</groupId>
<artifactId>commons-logging</artifactId>
</exclusion>
<exclusion>
<groupId>org.codehaus.woodstox</groupId>
<artifactId>wstx-asl</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.apache.httpcomponents</groupId>
<artifactId>httpmime</artifactId>
<version>4.3.4</version>
<!-- HttpSolrServer requires this dependency. -->
</dependency>
<!-- xerces -->
<dependency>
<groupId>xerces</groupId>
<artifactId>xercesImpl</artifactId>
<version>2.9.1</version>
</dependency>
</dependencies>
<repositories>
<repository>
<id>biopax-release</id>
<url>https://www.biopax.org/m2repo/releases/</url>
</repository>
<repository>
<id>intact.nexus</id>
<name>IntAct Nexus</name>
<url>https://www.ebi.ac.uk/intact/maven/nexus/content/groups/public/</url>
</repository>
<repository>
<id>nexus-ebi-release-repo</id>
<url>https://www.ebi.ac.uk/Tools/maven/repos/content/groups/ebi-repo/</url>
</repository>
<repository>
<id>nexus-ebi-snapshot-repo</id>
<url>https://www.ebi.ac.uk/Tools/maven/repos/content/groups/ebi-snapshots/</url>
</repository>
</repositories>
<distributionManagement>
<!-- EBI repo -->
<repository>
<id>pst-release</id>
<name>EBI Nexus Repository</name>
<url>https://www.ebi.ac.uk/Tools/maven/repos/content/repositories/pst-release/</url>
</repository>
<!-- EBI SNAPSHOT repo -->
<snapshotRepository>
<uniqueVersion>false</uniqueVersion>
<id>pst-snapshots</id>
<name>EBI Nexus Snapshots Repository</name>
<url>https://www.ebi.ac.uk/Tools/maven/repos/content/repositories/pst-snapshots/</url>
</snapshotRepository>
</distributionManagement>
</project>