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run.log
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run.log
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perl script/1.scaleFactor.pl data/mapped_readCount.txt scaleFactor.txt
perl script/2.callpeak_MACS2.pl scaleFactor.txt /home/park/Miyanari/ATAC/ATACprofWS/data/BED/ /home/park/Miyanari/ATAC/ATACprofWS/MACS2
sh MACS2/NC/NC_macs2.age
sh MACS2/PARP1/PARP1_macs2.age
sh MACS2/TFDP1/TFDP1_macs2.age
perl script/3.post_callpeak_MACS2_v4-1.pl scaleFactor.txt /home/park/Miyanari/ATAC/ATACprofWS/MACS2 /home/park/Miyanari/ATAC/ATACprofWS/postMACS2_v4-1
sh postMACS2_v4-1/PARP1/PARP1_pstMACS2.age
sh postMACS2_v4-1/TFDP1/TFDP1_pstMACS2.age
perl script/4.get_Profile.pl scaleFactor.txt /home/park/Miyanari/ATAC/ATACprofWS/postMACS2_v4-1/ /home/park/Miyanari/ATAC/ATACprofWS/Profile
perl script/5.plot_Distribution.pl Profile/Peak_Windows_10K/ NULL Profile/Boxplot
perl script/5.plot_Distribution.pl Profile/Peak_Windows_10K/ 2 Profile/Boxplot
perl script/6.plot_PeakPie.pl Profile/Peak_Positions/ Profile/Diff_Peaks/ 2