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PathwayMatcher

PathwayMatcher is a standalone command line tool to match human biomedical data to pathways. Its advanced mapping functions allow matching multiple types of omics data to the Reactome database: lists of genetic variants, gene or protein identifiers, and lists of peptides including post-translational modifications.

Please note that PathwayMatcher maps the experimental data to pathways in an exhaustive and unbiased fashion, without filtering, statistics, or biological inference. It is up to the user to interpret the results using the systems biology method that best suits the experiment and biomedical context.