Organism filter will remove interactions at pathwaycommons.org

[GoogleCodeExporter]

What steps will reproduce the problem?
1. Set organism limit to Homo Sapiens ( or any other organism)
2. Search for an protein or pathway


What is the expected output? What do you see instead?

Expected output is to list pathways and interactions. They are not
currently listed.

This is a difficult problem since the interactions does NOT have an
organism in BioPAX. One of the two logical rules should be used ( TBD):

The interaction should be displayed if
at least one of its participants belongs to the selected organism(s), 

OR alternatively

all of its participants with the exception of small molecules and base
class physical entites belong to the selected organim(s).

Original issue reported on code.google.com by emekdemir on 28 Sep 2009 at 5:25

[GoogleCodeExporter]

Original comment by cer...@gmail.com on 6 Jul 2011 at 2:26

• Added labels: Project-cPath1
• Removed labels: Project-cPath

[GoogleCodeExporter]

This will be fixed in cpath2

Original comment by emekdemir on 17 Jan 2012 at 4:02

• Changed state: WontFix

[GoogleCodeExporter]

Original comment by rod...@gmail.com on 4 Jan 2013 at 11:57

• Added labels: Product-cPath
• Removed labels: Project-cPath1

[IgorRodchenkov]

This issue was moved to PathwayCommons/cpath1#19