Support for proteins: NCBI linkouts

[jvwong]

With the introduction of Sars-Cov-2 proteins (PathwayCommons/grounding-search#72) it is no longer safe to assume that the grounding id for namespace:ncbi originates from the GENE database. Thankfully, there is information provided (type) to make this decision.

• Editor, entity tooltip

• Explore view, entity info

Other ...?

[jvwong]

Also check that the exports (BioPAX, SBGN, txt) make sense.

[jvwong]

What this issue boils down to is we need to start using standardized/consistent MIRIAM-based names for data across these projects (i.e. grounding-search, factoid). The added benefit is they resolve through identifers.org via provider de jour.

So the coupled requirements are:

• Update grounding-search to use registered namespace for each collection
• Update factoid with compensatory changes

Depends on PathwayCommons/grounding-search#75

Notes:

• https://docs.identifiers.org/articles/docs/identification_scheme.html