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There is a collision between the interrupts of SW_B and SW_D. Both PC1 and PC4 are available and are suitable for replacing one of the EXTI9 lines. PC1 is on the side of the microcontroller that faces SW_A and SW_C, so that is probably a good choice. PC1 is on the top, so I think it would route nicely over to SW_A.
Go through all the buttons and ensure they are on individual interrupts.
See also PaxInstruments/PaxInstruments-LabWiz-firmware#10 and PaxInstruments/PaxInstruments-LabWiz-firmware#12
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