pancancerProteinMRNA/notebook_steps/data/Scripts_to_make_transmutation_effects_dataframes at master · PayneLab/pancancerProteinMRNA

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Name		Name	Last commit message	Last commit date
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CCRCC_KDM5C_transmutation_effects.csv		CCRCC_KDM5C_transmutation_effects.csv
CCRCC_KIF1B_transmutation_effects.csv		CCRCC_KIF1B_transmutation_effects.csv
CCRCC_PBRM1_transmutation_effects.csv		CCRCC_PBRM1_transmutation_effects.csv
Endometrial_ARID1A_transmutation_effects.csv		Endometrial_ARID1A_transmutation_effects.csv
Endometrial_CTCF_transmutation_effects.csv		Endometrial_CTCF_transmutation_effects.csv
Endometrial_CTNNB1_transmutation_effects.csv		Endometrial_CTNNB1_transmutation_effects.csv
Endometrial_KMT2B_transmutation_effects.csv		Endometrial_KMT2B_transmutation_effects.csv
Endometrial_KRAS_transmutation_effects.csv		Endometrial_KRAS_transmutation_effects.csv
Endometrial_OBSCN_transmutation_effects.csv		Endometrial_OBSCN_transmutation_effects.csv
Endometrial_PIK3CA_transmutation_effects.csv		Endometrial_PIK3CA_transmutation_effects.csv
Endometrial_PIK3R1_transmutation_effects.csv		Endometrial_PIK3R1_transmutation_effects.csv
Endometrial_PTEN_transmutation_effects.csv		Endometrial_PTEN_transmutation_effects.csv
Endometrial_TTN_transmutation_effects.csv		Endometrial_TTN_transmutation_effects.csv
Find_Most_Mutated_Genes_and_Write_transmutation_scripts.ipynb		Find_Most_Mutated_Genes_and_Write_transmutation_scripts.ipynb
HNSCC_CDKN2A_transmutation_effects.csv		HNSCC_CDKN2A_transmutation_effects.csv
HNSCC_FAT1_transmutation_effects.csv		HNSCC_FAT1_transmutation_effects.csv
HNSCC_KMT2D_transmutation_effects.csv		HNSCC_KMT2D_transmutation_effects.csv
HNSCC_MUC16_transmutation_effects.csv		HNSCC_MUC16_transmutation_effects.csv
HNSCC_NOTCH1_transmutation_effects.csv		HNSCC_NOTCH1_transmutation_effects.csv
HNSCC_OBSCN_transmutation_effects.csv		HNSCC_OBSCN_transmutation_effects.csv
HNSCC_RELN_transmutation_effects.csv		HNSCC_RELN_transmutation_effects.csv
HNSCC_RYR1_transmutation_effects.csv		HNSCC_RYR1_transmutation_effects.csv
HNSCC_TTN_transmutation_effects.csv		HNSCC_TTN_transmutation_effects.csv
HNSCC_XIRP2_transmutation_effects.csv		HNSCC_XIRP2_transmutation_effects.csv
LSCC_COL11A1_transmutation_effects.csv		LSCC_COL11A1_transmutation_effects.csv
LSCC_DNAH5_transmutation_effects.csv		LSCC_DNAH5_transmutation_effects.csv
LSCC_KMT2D_transmutation_effects.csv		LSCC_KMT2D_transmutation_effects.csv
LSCC_MUC16_transmutation_effects.csv		LSCC_MUC16_transmutation_effects.csv
LSCC_NAV3_transmutation_effects.csv		LSCC_NAV3_transmutation_effects.csv
LSCC_OBSCN_transmutation_effects.csv		LSCC_OBSCN_transmutation_effects.csv
LSCC_SYNE1_transmutation_effects.csv		LSCC_SYNE1_transmutation_effects.csv
LSCC_TTN_transmutation_effects.csv		LSCC_TTN_transmutation_effects.csv
LSCC_XIRP2_transmutation_effects.csv		LSCC_XIRP2_transmutation_effects.csv
LSCC_ZFHX4_transmutation_effects.csv		LSCC_ZFHX4_transmutation_effects.csv
LUAD_APOB_transmutation_effects.csv		LUAD_APOB_transmutation_effects.csv
LUAD_COL11A1_transmutation_effects.csv		LUAD_COL11A1_transmutation_effects.csv
LUAD_CTNNA2_transmutation_effects.csv		LUAD_CTNNA2_transmutation_effects.csv
LUAD_EGFR_transmutation_effects.csv		LUAD_EGFR_transmutation_effects.csv
LUAD_FAT3_transmutation_effects.csv		LUAD_FAT3_transmutation_effects.csv
LUAD_KRAS_transmutation_effects.csv		LUAD_KRAS_transmutation_effects.csv
LUAD_MUC16_transmutation_effects.csv		LUAD_MUC16_transmutation_effects.csv
LUAD_PCLO_transmutation_effects.csv		LUAD_PCLO_transmutation_effects.csv
LUAD_TP53_transmutation_effects.csv		LUAD_TP53_transmutation_effects.csv
LUAD_TTN_transmutation_effects.csv		LUAD_TTN_transmutation_effects.csv
download_pancan.py		download_pancan.py
run_transmutation_scripts.sh		run_transmutation_scripts.sh
trans_CCRCC_KDM5C.sh		trans_CCRCC_KDM5C.sh
trans_CCRCC_KIF1B.sh		trans_CCRCC_KIF1B.sh
trans_CCRCC_PBRM1.sh		trans_CCRCC_PBRM1.sh
trans_Endometrial_ARID1A.sh		trans_Endometrial_ARID1A.sh
trans_Endometrial_CTCF.sh		trans_Endometrial_CTCF.sh
trans_Endometrial_CTNNB1.sh		trans_Endometrial_CTNNB1.sh
trans_Endometrial_KMT2B.sh		trans_Endometrial_KMT2B.sh
trans_Endometrial_KRAS.sh		trans_Endometrial_KRAS.sh
trans_Endometrial_OBSCN.sh		trans_Endometrial_OBSCN.sh
trans_Endometrial_PIK3CA.sh		trans_Endometrial_PIK3CA.sh
trans_Endometrial_PIK3R1.sh		trans_Endometrial_PIK3R1.sh
trans_Endometrial_PTEN.sh		trans_Endometrial_PTEN.sh
trans_Endometrial_TTN.sh		trans_Endometrial_TTN.sh
trans_HNSCC_CDKN2A.sh		trans_HNSCC_CDKN2A.sh
trans_HNSCC_FAT1.sh		trans_HNSCC_FAT1.sh
trans_HNSCC_KMT2D.sh		trans_HNSCC_KMT2D.sh
trans_HNSCC_MUC16.sh		trans_HNSCC_MUC16.sh
trans_HNSCC_NOTCH1.sh		trans_HNSCC_NOTCH1.sh
trans_HNSCC_OBSCN.sh		trans_HNSCC_OBSCN.sh
trans_HNSCC_RELN.sh		trans_HNSCC_RELN.sh
trans_HNSCC_RYR1.sh		trans_HNSCC_RYR1.sh
trans_HNSCC_TTN.sh		trans_HNSCC_TTN.sh
trans_HNSCC_XIRP2.sh		trans_HNSCC_XIRP2.sh
trans_LSCC_COL11A1.sh		trans_LSCC_COL11A1.sh
trans_LSCC_DNAH5.sh		trans_LSCC_DNAH5.sh
trans_LSCC_KMT2D.sh		trans_LSCC_KMT2D.sh
trans_LSCC_MUC16.sh		trans_LSCC_MUC16.sh
trans_LSCC_NAV3.sh		trans_LSCC_NAV3.sh
trans_LSCC_OBSCN.sh		trans_LSCC_OBSCN.sh
trans_LSCC_SYNE1.sh		trans_LSCC_SYNE1.sh
trans_LSCC_TTN.sh		trans_LSCC_TTN.sh
trans_LSCC_XIRP2.sh		trans_LSCC_XIRP2.sh
trans_LSCC_ZFHX4.sh		trans_LSCC_ZFHX4.sh
trans_LUAD_APOB.sh		trans_LUAD_APOB.sh
trans_LUAD_COL11A1.sh		trans_LUAD_COL11A1.sh
trans_LUAD_CTNNA2.sh		trans_LUAD_CTNNA2.sh
trans_LUAD_EGFR.sh		trans_LUAD_EGFR.sh
trans_LUAD_FAT3.sh		trans_LUAD_FAT3.sh
trans_LUAD_KRAS.sh		trans_LUAD_KRAS.sh
trans_LUAD_MUC16.sh		trans_LUAD_MUC16.sh
trans_LUAD_PCLO.sh		trans_LUAD_PCLO.sh
trans_LUAD_TP53.sh		trans_LUAD_TP53.sh
trans_LUAD_TTN.sh		trans_LUAD_TTN.sh
transmutation_effects.py		transmutation_effects.py

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