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Merge pull request #340 from a3sha2/master
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reduce ouput space
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@a3sha2
a3sha2 committed Jun 24, 2020
2 parents 3c9316e + 8c9d14a commit 0915522
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Showing 11 changed files with 21 additions and 213 deletions.
3 changes: 1 addition & 2 deletions .vscode/settings.json
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Original file line number Diff line number Diff line change
@@ -1,4 +1,3 @@
{
"restructuredtext.confPath": "${workspaceFolder}/docs",
"python.pythonPath": "/Users/adebimpe/opt/miniconda3/bin/python"
"restructuredtext.confPath": "${workspaceFolder}/docs"
}
6 changes: 3 additions & 3 deletions modules/task/task.mod
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Original file line number Diff line number Diff line change
Expand Up @@ -1109,7 +1109,7 @@ if [[ -d ${featout} ]]

# add post surface processing here if there is fmriprep

surf=$( ls -f $strucn/anat/*hemi-L_inflated.surf.gii 2>/dev/null )
surf=$( ls -f $strucn/anat/*hemi-R_inflated.surf.gii 2>/dev/null )
if [[ -f ${surf} ]] # this check if freesurfer exist
then
res4d=$(ls -f ${featout}/stats/*res4d.nii.gz )
Expand Down Expand Up @@ -1148,10 +1148,10 @@ if [[ -d ${featout} ]]
#now do the surface
for hem in lh rh
do
${FREESURFER_HOME}/bin/mri_vol2surf --mov ${outdir}/boldtoMNI.nii.gz --regheader fsaverage5 --hemi ${hem} \
${FREESURFER_HOME}/bin/mri_vol2surf --mov ${outdir}/boldtoMNI.nii.gz --regheader fsaverage --hemi ${hem} \
--o ${outdir}/${hem}_surface.nii.gz --projfrac-avg 0 1 0.1 --surf white

${FREESURFER_HOME}/bin/mris_convert -f ${outdir}/${hem}_surface.nii.gz ${SUBJECTS_DIR}/fsaverage5/surf/${hem}.sphere ${outdir}/${prefix}_res4d_${hem}.func.gii
${FREESURFER_HOME}/bin/mris_convert -f ${outdir}/${hem}_surface.nii.gz ${SUBJECTS_DIR}/fsaverage/surf/${hem}.sphere ${outdir}/${prefix}_res4d_${hem}.func.gii

done

Expand Down
44 changes: 2 additions & 42 deletions testing/mnifc24pgsr_outputs.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,6 @@ sub-1/alff/sub-1_alff.nii.gz
sub-1/alff/sub-1_alff_sm6.nii.gz
sub-1/alff/sub-1_alffZ.nii.gz
sub-1/alff/sub-1_alffZ_sm6.nii.gz
sub-1/alff/sub-1_referenceVolume.nii.gz
sub-1/confound2
sub-1/confound2/mc
sub-1/confound2/mc/sub-1_dvars-std.1D
Expand All @@ -25,68 +24,55 @@ sub-1/fcon
sub-1/fcon/aal116
sub-1/fcon/aal116/sub-1_aal116.net
sub-1/fcon/aal116/sub-1_aal116_network.txt
sub-1/fcon/aal116/sub-1_aal116.nii.gz
sub-1/fcon/aal116/sub-1_aal116_ts.1D
sub-1/fcon/desikanKilliany
sub-1/fcon/desikanKilliany/sub-1_desikanKilliany_missing.txt
sub-1/fcon/desikanKilliany/sub-1_desikanKilliany.net
sub-1/fcon/desikanKilliany/sub-1_desikanKilliany_network.txt
sub-1/fcon/desikanKilliany/sub-1_desikanKilliany.nii.gz
sub-1/fcon/desikanKilliany/sub-1_desikanKilliany_ts.1D
sub-1/fcon/glasser360
sub-1/fcon/glasser360/sub-1_glasser360_missing.txt
sub-1/fcon/glasser360/sub-1_glasser360.net
sub-1/fcon/glasser360/sub-1_glasser360_network.txt
sub-1/fcon/glasser360/sub-1_glasser360.nii.gz
sub-1/fcon/glasser360/sub-1_glasser360_ts.1D
sub-1/fcon/gordon333
sub-1/fcon/gordon333/sub-1_gordon333_missing.txt
sub-1/fcon/gordon333/sub-1_gordon333.net
sub-1/fcon/gordon333/sub-1_gordon333_network.txt
sub-1/fcon/gordon333/sub-1_gordon333.nii.gz
sub-1/fcon/gordon333/sub-1_gordon333_ts.1D
sub-1/fcon/HarvardOxford
sub-1/fcon/HarvardOxford/sub-1_HarvardOxford.net
sub-1/fcon/HarvardOxford/sub-1_HarvardOxford_network.txt
sub-1/fcon/HarvardOxford/sub-1_HarvardOxford.nii.gz
sub-1/fcon/HarvardOxford/sub-1_HarvardOxford_ts.1D
sub-1/fcon/power264
sub-1/fcon/power264/sub-1_power264_missing.txt
sub-1/fcon/power264/sub-1_power264.net
sub-1/fcon/power264/sub-1_power264_network.txt
sub-1/fcon/power264/sub-1_power264.nii.gz
sub-1/fcon/power264/sub-1_power264_ts.1D
sub-1/fcon/schaefer100x17
sub-1/fcon/schaefer100x17/sub-1_schaefer100x17.net
sub-1/fcon/schaefer100x17/sub-1_schaefer100x17_network.txt
sub-1/fcon/schaefer100x17/sub-1_schaefer100x17.nii.gz
sub-1/fcon/schaefer100x17/sub-1_schaefer100x17_ts.1D
sub-1/fcon/schaefer100x7
sub-1/fcon/schaefer100x7/sub-1_schaefer100x7.net
sub-1/fcon/schaefer100x7/sub-1_schaefer100x7_network.txt
sub-1/fcon/schaefer100x7/sub-1_schaefer100x7.nii.gz
sub-1/fcon/schaefer100x7/sub-1_schaefer100x7_ts.1D
sub-1/fcon/schaefer200x17
sub-1/fcon/schaefer200x17/sub-1_schaefer200x17.net
sub-1/fcon/schaefer200x17/sub-1_schaefer200x17_network.txt
sub-1/fcon/schaefer200x17/sub-1_schaefer200x17.nii.gz
sub-1/fcon/schaefer200x17/sub-1_schaefer200x17_ts.1D
sub-1/fcon/schaefer200x7
sub-1/fcon/schaefer200x7/sub-1_schaefer200x7.net
sub-1/fcon/schaefer200x7/sub-1_schaefer200x7_network.txt
sub-1/fcon/schaefer200x7/sub-1_schaefer200x7.nii.gz
sub-1/fcon/schaefer200x7/sub-1_schaefer200x7_ts.1D
sub-1/fcon/schaefer400x17
sub-1/fcon/schaefer400x17/sub-1_schaefer400x17.net
sub-1/fcon/schaefer400x17/sub-1_schaefer400x17_network.txt
sub-1/fcon/schaefer400x17/sub-1_schaefer400x17.nii.gz
sub-1/fcon/schaefer400x17/sub-1_schaefer400x17_ts.1D
sub-1/fcon/schaefer400x7
sub-1/fcon/schaefer400x7/sub-1_schaefer400x7.net
sub-1/fcon/schaefer400x7/sub-1_schaefer400x7_network.txt
sub-1/fcon/schaefer400x7/sub-1_schaefer400x7.nii.gz
sub-1/fcon/schaefer400x7/sub-1_schaefer400x7_ts.1D
sub-1/fcon/sub-1_referenceVolume.nii.gz
sub-1/figures
sub-1/figures/sub-1_alff.svg
sub-1/figures/sub-1_corrplot.svg
Expand Down Expand Up @@ -122,16 +108,7 @@ sub-1/prestats/sub-1_coregCrossCorr.txt
sub-1/prestats/sub-1_coregDice.txt
sub-1/prestats/sub-1_coregJaccard.txt
sub-1/prestats/sub-1_fmriconf.tsv
sub-1/prestats/sub-1_mask.nii.gz
sub-1/prestats/sub-1_preprocessed.nii.gz
sub-1/prestats/sub-1_referenceVolumeBrain.nii.gz
sub-1/prestats/sub-1_referenceVolume.nii.gz
sub-1/prestats/sub-1_segmentation.nii.gz
sub-1/prestats/sub-1_structbrain.nii.gz
sub-1/prestats/sub-1_structmask.nii.gz
sub-1/prestats/sub-1_struct.nii.gz
sub-1/qcfc
sub-1/qcfc/sub-1_depthMap.nii.gz
sub-1/qcfc/sub-1_dvars-mean.txt
sub-1/qcfc/sub-1_dvars-raw.1D
sub-1/qcfc/sub-1_dvars-std.1D
Expand All @@ -146,7 +123,6 @@ sub-1/regress/sub-1_img_sm6.nii.gz
sub-1/regress/sub-1_nVolumesCensored.txt
sub-1/regress/sub-1_residualised.nii.gz
sub-1/reho
sub-1/reho/sub-1_referenceVolume.nii.gz
sub-1/reho/sub-1_reho.nii.gz
sub-1/reho/sub-1_reho_sm6.nii.gz
sub-1/reho/sub-1_rehoZ.nii.gz
Expand All @@ -157,86 +133,71 @@ sub-1/roiquant/aal116/sub-1_aal116_mean_alff.csv
sub-1/roiquant/aal116/sub-1_aal116_mean_alffZ.csv
sub-1/roiquant/aal116/sub-1_aal116_mean_reho.csv
sub-1/roiquant/aal116/sub-1_aal116_mean_rehoZ.csv
sub-1/roiquant/aal116/sub-1_aal116.nii.gz
sub-1/roiquant/desikanKilliany
sub-1/roiquant/desikanKilliany/sub-1_desikanKilliany_mean_alff.csv
sub-1/roiquant/desikanKilliany/sub-1_desikanKilliany_mean_alffZ.csv
sub-1/roiquant/desikanKilliany/sub-1_desikanKilliany_mean_reho.csv
sub-1/roiquant/desikanKilliany/sub-1_desikanKilliany_mean_rehoZ.csv
sub-1/roiquant/desikanKilliany/sub-1_desikanKilliany.nii.gz
sub-1/roiquant/glasser360
sub-1/roiquant/glasser360/sub-1_glasser360_mean_alff.csv
sub-1/roiquant/glasser360/sub-1_glasser360_mean_alffZ.csv
sub-1/roiquant/glasser360/sub-1_glasser360_mean_reho.csv
sub-1/roiquant/glasser360/sub-1_glasser360_mean_rehoZ.csv
sub-1/roiquant/glasser360/sub-1_glasser360.nii.gz
sub-1/roiquant/global
sub-1/roiquant/global/sub-1_global_mean_alff.csv
sub-1/roiquant/global/sub-1_global_mean_alffZ.csv
sub-1/roiquant/global/sub-1_global_mean_reho.csv
sub-1/roiquant/global/sub-1_global_mean_rehoZ.csv
sub-1/roiquant/global/sub-1_global.nii.gz
sub-1/roiquant/gordon333
sub-1/roiquant/gordon333/sub-1_gordon333_mean_alff.csv
sub-1/roiquant/gordon333/sub-1_gordon333_mean_alffZ.csv
sub-1/roiquant/gordon333/sub-1_gordon333_mean_reho.csv
sub-1/roiquant/gordon333/sub-1_gordon333_mean_rehoZ.csv
sub-1/roiquant/gordon333/sub-1_gordon333.nii.gz
sub-1/roiquant/HarvardOxford
sub-1/roiquant/HarvardOxford/sub-1_HarvardOxford_mean_alff.csv
sub-1/roiquant/HarvardOxford/sub-1_HarvardOxford_mean_alffZ.csv
sub-1/roiquant/HarvardOxford/sub-1_HarvardOxford_mean_reho.csv
sub-1/roiquant/HarvardOxford/sub-1_HarvardOxford_mean_rehoZ.csv
sub-1/roiquant/HarvardOxford/sub-1_HarvardOxford.nii.gz
sub-1/roiquant/power264
sub-1/roiquant/power264/sub-1_power264_mean_alff.csv
sub-1/roiquant/power264/sub-1_power264_mean_alffZ.csv
sub-1/roiquant/power264/sub-1_power264_mean_reho.csv
sub-1/roiquant/power264/sub-1_power264_mean_rehoZ.csv
sub-1/roiquant/power264/sub-1_power264.nii.gz
sub-1/roiquant/schaefer100x17
sub-1/roiquant/schaefer100x17/sub-1_schaefer100x17_mean_alff.csv
sub-1/roiquant/schaefer100x17/sub-1_schaefer100x17_mean_alffZ.csv
sub-1/roiquant/schaefer100x17/sub-1_schaefer100x17_mean_reho.csv
sub-1/roiquant/schaefer100x17/sub-1_schaefer100x17_mean_rehoZ.csv
sub-1/roiquant/schaefer100x17/sub-1_schaefer100x17.nii.gz
sub-1/roiquant/schaefer100x7
sub-1/roiquant/schaefer100x7/sub-1_schaefer100x7_mean_alff.csv
sub-1/roiquant/schaefer100x7/sub-1_schaefer100x7_mean_alffZ.csv
sub-1/roiquant/schaefer100x7/sub-1_schaefer100x7_mean_reho.csv
sub-1/roiquant/schaefer100x7/sub-1_schaefer100x7_mean_rehoZ.csv
sub-1/roiquant/schaefer100x7/sub-1_schaefer100x7.nii.gz
sub-1/roiquant/schaefer200x17
sub-1/roiquant/schaefer200x17/sub-1_schaefer200x17_mean_alff.csv
sub-1/roiquant/schaefer200x17/sub-1_schaefer200x17_mean_alffZ.csv
sub-1/roiquant/schaefer200x17/sub-1_schaefer200x17_mean_reho.csv
sub-1/roiquant/schaefer200x17/sub-1_schaefer200x17_mean_rehoZ.csv
sub-1/roiquant/schaefer200x17/sub-1_schaefer200x17.nii.gz
sub-1/roiquant/schaefer200x7
sub-1/roiquant/schaefer200x7/sub-1_schaefer200x7_mean_alff.csv
sub-1/roiquant/schaefer200x7/sub-1_schaefer200x7_mean_alffZ.csv
sub-1/roiquant/schaefer200x7/sub-1_schaefer200x7_mean_reho.csv
sub-1/roiquant/schaefer200x7/sub-1_schaefer200x7_mean_rehoZ.csv
sub-1/roiquant/schaefer200x7/sub-1_schaefer200x7.nii.gz
sub-1/roiquant/schaefer200x7/sub-1_schaefer200x7_mean_rehoZ.csv
sub-1/roiquant/schaefer400x17
sub-1/roiquant/schaefer400x17/sub-1_schaefer400x17_mean_alff.csv
sub-1/roiquant/schaefer400x17/sub-1_schaefer400x17_mean_alffZ.csv
sub-1/roiquant/schaefer400x17/sub-1_schaefer400x17_mean_reho.csv
sub-1/roiquant/schaefer400x17/sub-1_schaefer400x17_mean_rehoZ.csv
sub-1/roiquant/schaefer400x17/sub-1_schaefer400x17.nii.gz
sub-1/roiquant/schaefer400x17/sub-1_schaefer400x17_mean_rehoZ.csv
sub-1/roiquant/schaefer400x7
sub-1/roiquant/schaefer400x7/sub-1_schaefer400x7_mean_alff.csv
sub-1/roiquant/schaefer400x7/sub-1_schaefer400x7_mean_alffZ.csv
sub-1/roiquant/schaefer400x7/sub-1_schaefer400x7_mean_reho.csv
sub-1/roiquant/schaefer400x7/sub-1_schaefer400x7_mean_rehoZ.csv
sub-1/roiquant/schaefer400x7/sub-1_schaefer400x7.nii.gz
sub-1/roiquant/segmentation
sub-1/roiquant/segmentation/sub-1_segmentation_mean_alff.csv
sub-1/roiquant/segmentation/sub-1_segmentation_mean_alffZ.csv
sub-1/roiquant/segmentation/sub-1_segmentation_mean_reho.csv
sub-1/roiquant/segmentation/sub-1_segmentation_mean_rehoZ.csv
sub-1/roiquant/segmentation/sub-1_segmentation.nii.gz
sub-1/roiquant/sub-1_referenceVolume.nii.gz
sub-1/sub-1_atlas
sub-1/sub-1_atlas/sub-1_aal116.nii.gz
sub-1/sub-1_atlas/sub-1_desikanKilliany.nii.gz
Expand All @@ -259,5 +220,4 @@ sub-1/sub-1-nFlags.1D
sub-1/sub-1.nii.gz
sub-1/sub-1_quality.csv
sub-1/sub-1_report.html
sub-1/template.nii.gz
/tmp/mnifc24pgsr/xcpOutput
18 changes: 0 additions & 18 deletions testing/mnifcacompcor_outputs.txt
View file
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,6 @@ sub-1/alff/sub-1_alff.nii.gz
sub-1/alff/sub-1_alff_sm6.nii.gz
sub-1/alff/sub-1_alffZ.nii.gz
sub-1/alff/sub-1_alffZ_sm6.nii.gz
sub-1/alff/sub-1_referenceVolume.nii.gz
sub-1/confound2
sub-1/confound2/mc
sub-1/confound2/mc/sub-1_dvars-mean.txt
Expand All @@ -29,9 +28,7 @@ sub-1/fcon/power264
sub-1/fcon/power264/sub-1_power264_missing.txt
sub-1/fcon/power264/sub-1_power264.net
sub-1/fcon/power264/sub-1_power264_network.txt
sub-1/fcon/power264/sub-1_power264.nii.gz
sub-1/fcon/power264/sub-1_power264_ts.1D
sub-1/fcon/sub-1_referenceVolume.nii.gz
sub-1/figures
sub-1/figures/sub-1_alff.svg
sub-1/figures/sub-1_corrplot.svg
Expand Down Expand Up @@ -67,16 +64,7 @@ sub-1/prestats/sub-1_coregCrossCorr.txt
sub-1/prestats/sub-1_coregDice.txt
sub-1/prestats/sub-1_coregJaccard.txt
sub-1/prestats/sub-1_fmriconf.tsv
sub-1/prestats/sub-1_mask.nii.gz
sub-1/prestats/sub-1_preprocessed.nii.gz
sub-1/prestats/sub-1_referenceVolumeBrain.nii.gz
sub-1/prestats/sub-1_referenceVolume.nii.gz
sub-1/prestats/sub-1_segmentation.nii.gz
sub-1/prestats/sub-1_structbrain.nii.gz
sub-1/prestats/sub-1_structmask.nii.gz
sub-1/prestats/sub-1_struct.nii.gz
sub-1/qcfc
sub-1/qcfc/sub-1_depthMap.nii.gz
sub-1/qcfc/sub-1_dvars-mean.txt
sub-1/qcfc/sub-1_dvars-raw.1D
sub-1/qcfc/sub-1_dvars-std.1D
Expand All @@ -91,7 +79,6 @@ sub-1/regress/sub-1_img_sm6.nii.gz
sub-1/regress/sub-1_nVolumesCensored.txt
sub-1/regress/sub-1_residualised.nii.gz
sub-1/reho
sub-1/reho/sub-1_referenceVolume.nii.gz
sub-1/reho/sub-1_reho.nii.gz
sub-1/reho/sub-1_reho_sm6.nii.gz
sub-1/reho/sub-1_rehoZ.nii.gz
Expand All @@ -102,20 +89,16 @@ sub-1/roiquant/global/sub-1_global_mean_alff.csv
sub-1/roiquant/global/sub-1_global_mean_alffZ.csv
sub-1/roiquant/global/sub-1_global_mean_reho.csv
sub-1/roiquant/global/sub-1_global_mean_rehoZ.csv
sub-1/roiquant/global/sub-1_global.nii.gz
sub-1/roiquant/power264
sub-1/roiquant/power264/sub-1_power264_mean_alff.csv
sub-1/roiquant/power264/sub-1_power264_mean_alffZ.csv
sub-1/roiquant/power264/sub-1_power264_mean_reho.csv
sub-1/roiquant/power264/sub-1_power264_mean_rehoZ.csv
sub-1/roiquant/power264/sub-1_power264.nii.gz
sub-1/roiquant/segmentation
sub-1/roiquant/segmentation/sub-1_segmentation_mean_alff.csv
sub-1/roiquant/segmentation/sub-1_segmentation_mean_alffZ.csv
sub-1/roiquant/segmentation/sub-1_segmentation_mean_reho.csv
sub-1/roiquant/segmentation/sub-1_segmentation_mean_rehoZ.csv
sub-1/roiquant/segmentation/sub-1_segmentation.nii.gz
sub-1/roiquant/sub-1_referenceVolume.nii.gz
sub-1/sub-1_atlas
sub-1/sub-1_atlas/sub-1_global.nii.gz
sub-1/sub-1_atlas/sub-1_power264.nii.gz
Expand All @@ -127,5 +110,4 @@ sub-1/sub-1-nFlags.1D
sub-1/sub-1.nii.gz
sub-1/sub-1_quality.csv
sub-1/sub-1_report.html
sub-1/template.nii.gz
/tmp/mnifcacompcor/xcpOutput
18 changes: 0 additions & 18 deletions testing/mnifctcompcor_outputs.txt
View file
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,6 @@ sub-1/alff/sub-1_alff.nii.gz
sub-1/alff/sub-1_alff_sm6.nii.gz
sub-1/alff/sub-1_alffZ.nii.gz
sub-1/alff/sub-1_alffZ_sm6.nii.gz
sub-1/alff/sub-1_referenceVolume.nii.gz
sub-1/confound2
sub-1/confound2/mc
sub-1/confound2/mc/sub-1_dvars-std.1D
Expand All @@ -26,9 +25,7 @@ sub-1/fcon/power264
sub-1/fcon/power264/sub-1_power264_missing.txt
sub-1/fcon/power264/sub-1_power264.net
sub-1/fcon/power264/sub-1_power264_network.txt
sub-1/fcon/power264/sub-1_power264.nii.gz
sub-1/fcon/power264/sub-1_power264_ts.1D
sub-1/fcon/sub-1_referenceVolume.nii.gz
sub-1/figures
sub-1/figures/sub-1_alff.svg
sub-1/figures/sub-1_corrplot.svg
Expand Down Expand Up @@ -64,16 +61,7 @@ sub-1/prestats/sub-1_coregCrossCorr.txt
sub-1/prestats/sub-1_coregDice.txt
sub-1/prestats/sub-1_coregJaccard.txt
sub-1/prestats/sub-1_fmriconf.tsv
sub-1/prestats/sub-1_mask.nii.gz
sub-1/prestats/sub-1_preprocessed.nii.gz
sub-1/prestats/sub-1_referenceVolumeBrain.nii.gz
sub-1/prestats/sub-1_referenceVolume.nii.gz
sub-1/prestats/sub-1_segmentation.nii.gz
sub-1/prestats/sub-1_structbrain.nii.gz
sub-1/prestats/sub-1_structmask.nii.gz
sub-1/prestats/sub-1_struct.nii.gz
sub-1/qcfc
sub-1/qcfc/sub-1_depthMap.nii.gz
sub-1/qcfc/sub-1_dvars-mean.txt
sub-1/qcfc/sub-1_dvars-raw.1D
sub-1/qcfc/sub-1_dvars-std.1D
Expand All @@ -88,7 +76,6 @@ sub-1/regress/sub-1_img_sm6.nii.gz
sub-1/regress/sub-1_nVolumesCensored.txt
sub-1/regress/sub-1_residualised.nii.gz
sub-1/reho
sub-1/reho/sub-1_referenceVolume.nii.gz
sub-1/reho/sub-1_reho.nii.gz
sub-1/reho/sub-1_reho_sm6.nii.gz
sub-1/reho/sub-1_rehoZ.nii.gz
Expand All @@ -99,20 +86,16 @@ sub-1/roiquant/global/sub-1_global_mean_alff.csv
sub-1/roiquant/global/sub-1_global_mean_alffZ.csv
sub-1/roiquant/global/sub-1_global_mean_reho.csv
sub-1/roiquant/global/sub-1_global_mean_rehoZ.csv
sub-1/roiquant/global/sub-1_global.nii.gz
sub-1/roiquant/power264
sub-1/roiquant/power264/sub-1_power264_mean_alff.csv
sub-1/roiquant/power264/sub-1_power264_mean_alffZ.csv
sub-1/roiquant/power264/sub-1_power264_mean_reho.csv
sub-1/roiquant/power264/sub-1_power264_mean_rehoZ.csv
sub-1/roiquant/power264/sub-1_power264.nii.gz
sub-1/roiquant/segmentation
sub-1/roiquant/segmentation/sub-1_segmentation_mean_alff.csv
sub-1/roiquant/segmentation/sub-1_segmentation_mean_alffZ.csv
sub-1/roiquant/segmentation/sub-1_segmentation_mean_reho.csv
sub-1/roiquant/segmentation/sub-1_segmentation_mean_rehoZ.csv
sub-1/roiquant/segmentation/sub-1_segmentation.nii.gz
sub-1/roiquant/sub-1_referenceVolume.nii.gz
sub-1/sub-1_atlas
sub-1/sub-1_atlas/sub-1_global.nii.gz
sub-1/sub-1_atlas/sub-1_power264.nii.gz
Expand All @@ -124,5 +107,4 @@ sub-1/sub-1-nFlags.1D
sub-1/sub-1.nii.gz
sub-1/sub-1_quality.csv
sub-1/sub-1_report.html
sub-1/template.nii.gz
/tmp/mnifctcompcor/xcpOutput

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