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Update index.rst
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sattertt committed Jan 17, 2019
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Expand Up @@ -9,7 +9,6 @@ pipeline. Each module either (a) processes the main brain image (the *analyte*),
filtering or denoising it, or (b) uses the analyte to produce another dataset, called a
*derivative*. (It’s also possible for modules to use derivatives to produce further derivatives).

:ref:`prestats`

Functional image processing
---------------------------
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Anatomical image processing
----------------------------

Modules that process the analyte for anatomical data.
Modules that process the analyte for anatomical data. Note that anatomical imaging processing using the `struct` module is *NOT* required unless desired, anatomic processing completed as part of fMRIPREP can be used instead.

* :ref:`struc`: Omnibus module for volumetric anatomical preprocessing. Leverages ANTs to execute
N4 bias field correction, SyN diffeomorphic registration, Atropos segmentation (prior-driven or
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