Merge pull request #353 from a3sha2/master

Update task.mod
PennLINC · Jun 28, 2020 · 9a57557 · 9a57557
2 parents 0672464 + 73e08eb
commit 9a57557
Showing 1 changed file with 3 additions and 7 deletions.
diff --git a/modules/task/task.mod b/modules/task/task.mod
@@ -227,8 +227,8 @@ if (( ${task_fmriprep[cxt]} == 1 ))
 
         conf2="_desc-confounds_regressors.json"
         if [[ -f ${imgprt}${conf2} ]]; then 
-           exec_sys cp ${imgprt}${conf2} $out/prestats/${prefix}_fmriconf.json
-           output confjson $out/prestats/${prefix}_fmriconf.json
+           exec_sys cp ${imgprt}${conf2} $out/task/${prefix}_fmriconf.json
+           output confjson $out/task/${prefix}_fmriconf.json
         fi
 
        output fmriprepconf  ${out}/task/${prefix}_fmriconf.tsv 
@@ -380,11 +380,7 @@ if (( ${task_fmriprep[cxt]} == 1 ))
                     -s ${spaces[sub]} 2>/dev/null
 
 
-                intermediate=${intermediate}_${cur} 
-
-
-
-
+                intermediate=${intermediate}_${cur}            
           else 
                #  find which template is present 
                b1=${img1[sub]##*space-};