/
NAMESPACE
87 lines (86 loc) · 2.57 KB
/
NAMESPACE
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# Generated by roxygen2: do not edit by hand
export("sparseAssay<-")
export("sparseAssayNames<-")
export("sparseAssays<-")
export(SAapply)
export(SparseAssays)
export(SparseSummarizedExperiment)
export(densify)
export(makeSEFromSSE)
export(sparseAssay)
export(sparseAssayNames)
export(sparseAssays)
exportClasses(RangedSparseSummarizedExperiment)
exportClasses(SimpleListSparseAssays)
exportClasses(SparseAssays)
exportClasses(SparseSummarizedExperiment)
exportMethods("[")
exportMethods("[<-")
exportMethods("[[")
exportMethods("[[<-")
exportMethods("names<-")
exportMethods("sparseAssay<-")
exportMethods("sparseAssayNames<-")
exportMethods("sparseAssays<-")
exportMethods(NROW)
exportMethods(SAapply)
exportMethods(SparseSummarizedExperiment)
exportMethods(cbind)
exportMethods(combine)
exportMethods(densify)
exportMethods(dim)
exportMethods(dimnames)
exportMethods(length)
exportMethods(names)
exportMethods(rbind)
exportMethods(show)
exportMethods(sparseAssay)
exportMethods(sparseAssayNames)
exportMethods(sparseAssays)
import(BiocGenerics)
import(SummarizedExperiment)
importClassesFrom(S4Vectors,SimpleList)
importFrom(BiocParallel,SerialParam)
importFrom(BiocParallel,bplapply)
importFrom(BiocParallel,bpparam)
importFrom(GenomicRanges,GRangesList)
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,SimpleList)
importFrom(S4Vectors,isTRUEorFALSE)
importFrom(S4Vectors,normalizeSingleBracketSubscript)
importFrom(S4Vectors,setValidity2)
importFrom(data.table,":=")
importFrom(data.table,.GRP)
importFrom(data.table,.I)
importFrom(data.table,as.data.table)
importFrom(data.table,key)
importFrom(data.table,setDT)
importFrom(data.table,setkey)
importFrom(data.table,setkeyv)
importFrom(data.table,setnames)
importFrom(methods,as)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,selectMethod)
importFrom(methods,setAs)
importFrom(methods,setClass)
importFrom(methods,setGeneric)
importFrom(methods,setMethod)
importFrom(methods,setReplaceMethod)
importFrom(methods,validObject)
importFrom(stats,complete.cases)
importFrom(stats,na.omit)
importFrom(stats,setNames)
importFrom(utils,globalVariables)
importMethodsFrom(IRanges,findOverlaps)
importMethodsFrom(S4Vectors,"mcols<-")
importMethodsFrom(S4Vectors,endoapply)
importMethodsFrom(S4Vectors,findMatches)
importMethodsFrom(S4Vectors,getListElement)
importMethodsFrom(S4Vectors,mcols)
importMethodsFrom(S4Vectors,mendoapply)
importMethodsFrom(S4Vectors,metadata)
importMethodsFrom(S4Vectors,normalizeSingleBracketReplacementValue)
importMethodsFrom(S4Vectors,queryHits)
importMethodsFrom(S4Vectors,setListElement)
importMethodsFrom(S4Vectors,subjectHits)