/
AssemblyModule.jl
1286 lines (1105 loc) · 40.1 KB
/
AssemblyModule.jl
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"""
AssemblyModule
Module for assemblers of system matrices and vectors.
"""
module AssemblyModule
__precompile__(true)
using SparseArrays: sparse, spzeros, SparseMatrixCSC
using LinearAlgebra: diag
import Base: eltype
using ..MatrixUtilityModule: matrix_blocked_ff, vector_blocked_f
"""
AbstractSysmatAssembler
Abstract type of system-matrix assembler.
"""
abstract type AbstractSysmatAssembler end
"""
eltype(a::A) where {A <: AbstractSysmatAssembler}
What is the type of the matrix buffer entries?
"""
eltype(a::A) where {A<:AbstractSysmatAssembler} = eltype(a._matbuffer)
setnomatrixresult(a::A, nomatrixresult) where {A<:AbstractSysmatAssembler} =
let
a._nomatrixresult = nomatrixresult
a
end
setforceinit(a::A, force_init) where {A<:AbstractSysmatAssembler} =
let
a._force_init = force_init
a
end
"""
expectedntriples(
a::A,
elem_mat_nrows::IT,
elem_mat_ncols::IT,
n_elem_mats::IT,
) where {A<:AbstractSysmatAssembler, IT}
How many triples (I, J, V) does the assembler expect to store?
Default is: the product of the size of the element matrices times the
number of matrices.
"""
expectedntriples(
a::A,
elem_mat_nrows::IT,
elem_mat_ncols::IT,
n_elem_mats::IT,
) where {A<:AbstractSysmatAssembler,IT} = elem_mat_nrows * elem_mat_ncols * n_elem_mats
function _resize_buffers(self, chunk)
new_buffer_length = self._buffer_length + chunk
resize!(self._rowbuffer, new_buffer_length)
resize!(self._colbuffer, new_buffer_length)
resize!(self._matbuffer, new_buffer_length)
if self._force_init
setvectorentries!(@view(self._rowbuffer[(self._buffer_length+1):end]), 1)
setvectorentries!(@view(self._colbuffer[(self._buffer_length+1):end]), 1)
setvectorentries!(
@view(self._matbuffer[(self._buffer_length+1):end]),
zero(eltype(self._matbuffer)),
)
end
self._buffer_length = new_buffer_length
return self
end
"""
SysmatAssemblerSparse{IT, MBT, IBT} <: AbstractSysmatAssembler
Type for assembling a sparse global matrix from elementwise matrices.
!!! note
All fields of the datatype are private. The type is manipulated by the
functions `startassembly!`, `assemble!`, and `makematrix!`.
"""
mutable struct SysmatAssemblerSparse{IT,T,MBT<:AbstractVector{T},IJT<:AbstractVector{IT}} <:
AbstractSysmatAssembler
_buffer_length::IT
_matbuffer::MBT
_rowbuffer::IJT
_colbuffer::IJT
_buffer_pointer::IT
_row_nalldofs::IT
_col_nalldofs::IT
_nomatrixresult::Bool
_force_init::Bool
end
"""
SysmatAssemblerSparse(z = zero(T), nomatrixresult = false) where {T}
Construct a sparse system matrix assembler.
The matrix entries are of type `T`. The assembler either produces a sparse
matrix (when `nomatrixresult = true`), or does not (when `nomatrixresult =
false`). When the assembler does not produce the sparse matrix when
`makematrix!` is called, it still can be constructed from the buffers stored in
the assembler, until they are cleared when the assembler is destroyed.
# Example
This is how a sparse matrix is assembled from two rectangular dense matrices.
```
a = SysmatAssemblerSparse(0.0)
startassembly!(a, 5, 5, 3, 7, 7)
m = [0.24406 0.599773 0.833404 0.0420141
0.786024 0.00206713 0.995379 0.780298
0.845816 0.198459 0.355149 0.224996]
assemble!(a, m, [1 7 5], [5 2 1 4])
m = [0.146618 0.53471 0.614342 0.737833
0.479719 0.41354 0.00760941 0.836455
0.254868 0.476189 0.460794 0.00919633
0.159064 0.261821 0.317078 0.77646
0.643538 0.429817 0.59788 0.958909]
assemble!(a, m, [2 3 1 7 5], [6 7 3 4])
A = makematrix!(a)
```
Here `A` is a sparse matrix of the size 7x7.
When the `nomatrixresult` is set as true, no matrix is produced.
```
a = SysmatAssemblerSparse(0.0, true)
startassembly!(a, 5, 5, 3, 7, 7)
m = [0.24406 0.599773 0.833404 0.0420141
0.786024 0.00206713 0.995379 0.780298
0.845816 0.198459 0.355149 0.224996]
assemble!(a, m, [1 7 5], [5 2 1 4])
m = [0.146618 0.53471 0.614342 0.737833
0.479719 0.41354 0.00760941 0.836455
0.254868 0.476189 0.460794 0.00919633
0.159064 0.261821 0.317078 0.77646
0.643538 0.429817 0.59788 0.958909]
assemble!(a, m, [2 3 1 7 5], [6 7 3 4])
A = makematrix!(a)
```
Here `A` is a named tuple of four sparse zero matrices. To construct the correct matrix is still
possible, for instance like this:
```
a.nomatrixresult = false
A = makematrix!(a)
```
At this point all the buffers of the assembler have potentially been cleared,
and `makematrix!(a) ` is no longer possible.
"""
function SysmatAssemblerSparse(z::T, nomatrixresult = false) where {T}
return SysmatAssemblerSparse(0, T[z], Int[0], Int[0], 0, 0, 0, nomatrixresult, false)
end
function SysmatAssemblerSparse()
return SysmatAssemblerSparse(zero(Float64))
end
"""
startassembly!(self::SysmatAssemblerSparse{T},
elem_mat_nrows::IT,
elem_mat_ncols::IT,
n_elem_mats::IT,
row_nalldofs::IT,
col_nalldofs::IT;
force_init = false
) where {T, IT<:Integer}
Start the assembly of a global matrix.
The method makes buffers for matrix assembly. It must be called before
the first call to the method `assemble!`.
# Arguments
- `elem_mat_nrows` = row dimension of the element matrix;
- `elem_mat_ncols` = column dimension of the element matrix;
- `n_elem_mats` = number of element matrices;
- `row_nalldofs`= The total number of rows as a tuple;
- `col_nalldofs`= The total number of columns as a tuple.
If the `buffer_pointer` field of the assembler is 0, which is the case after
that assembler was created, the buffers are resized appropriately given the
dimensions on input. Otherwise, the buffers are left completely untouched. The
`buffer_pointer` is set to the beginning of the buffer, namely 1.
# Returns
- `self`: the modified assembler.
!!! note
The buffers are initially not filled with anything meaningful.
After the assembly, only the `(self._buffer_pointer - 1)` entries
are meaningful numbers. Beware!
!!! note
The buffers may be automatically resized if more numbers are assembled
then initially intended. However, this operation will not necessarily
be efficient and fast.
"""
function startassembly!(
self::SysmatAssemblerSparse{T},
elem_mat_nrows::IT,
elem_mat_ncols::IT,
n_elem_mats::IT,
row_nalldofs::IT,
col_nalldofs::IT;
force_init = false,
) where {T,IT<:Integer}
expected_ntriples = expectedntriples(self, elem_mat_nrows, elem_mat_ncols, n_elem_mats)
# Only resize the buffers if the pointer is less than 1; otherwise the
# buffers are already initialized and in use.
if self._buffer_pointer < 1
self._buffer_length = expected_ntriples
resize!(self._rowbuffer, self._buffer_length)
resize!(self._colbuffer, self._buffer_length)
resize!(self._matbuffer, self._buffer_length)
self._buffer_pointer = 1
self._row_nalldofs = row_nalldofs
self._col_nalldofs = col_nalldofs
end
# Leave the buffers uninitialized, unless the user requests otherwise
self._force_init = force_init
if self._force_init
setvectorentries!(self._rowbuffer, 1)
setvectorentries!(self._colbuffer, 1)
setvectorentries!(self._matbuffer, zero(eltype(self._matbuffer)))
end
return self
end
"""
assemble!(
self::SysmatAssemblerSparse,
mat::MT,
dofnums_row::IT,
dofnums_col::IT,
) where {MT, IT}
Assemble a rectangular matrix.
"""
function assemble!(
self::SysmatAssemblerSparse,
mat::MBT,
dofnums_row::CIT,
dofnums_col::CIT,
) where {MBT,CIT}
# Assembly of a rectangular matrix.
# The method assembles a rectangular matrix using the two vectors of
# equation numbers for the rows and columns.
nrows = length(dofnums_row)
ncolumns = length(dofnums_col)
p = self._buffer_pointer
if self._buffer_length < p + ncolumns * nrows - 1
self = _resize_buffers(self, ncolumns * nrows * 1000)
end
size(mat) == (nrows, ncolumns) || error("Wrong size of matrix")
@inbounds for j = 1:ncolumns
dj = dofnums_col[j]
dj < 1 && error("Column degree of freedom < 1")
dj > self._col_nalldofs && error("Column degree of freedom > size")
for i = 1:nrows
di = dofnums_row[i]
di < 1 && error("Row degree of freedom < 1")
di > self._row_nalldofs && error("Row degree of freedom > size")
self._matbuffer[p] = mat[i, j] # serialized matrix
self._rowbuffer[p] = di
self._colbuffer[p] = dj
p = p + 1
end
end
self._buffer_pointer = p
return self
end
"""
makematrix!(self::SysmatAssemblerSparse)
Make a sparse matrix.
The sparse matrix is returned.
!!! note
If `nomatrixresult` is set to true, dummy (zero) sparse matrices are
returned. The entire result of the assembly is preserved in the assembler
buffers. The ends of the buffers are filled with illegal
(ignorable) values.
!!! note
When the matrix is constructed (`nomatrixresult` is false), the buffers
are not deallocated, and the `buffer_pointer` is set to 1. It is then
possible to immediately start assembling another matrix.
"""
function makematrix!(self::SysmatAssemblerSparse)
(length(self._rowbuffer) >= self._buffer_pointer - 1) || error("Access outside of buffer")
(length(self._colbuffer) >= self._buffer_pointer - 1) || error("Access outside of buffer")
# We have the option of retaining the assembled results, but not
# constructing the sparse matrix.
if self._nomatrixresult
# Dummy (zero) sparse matrix is returned. The entire result of the
# assembly is preserved in the assembler buffers. The ends of the
# buffers are filled with legal (ignorable) values.
self._rowbuffer[(self._buffer_pointer):end] .= 1
self._colbuffer[(self._buffer_pointer):end] .= 1
self._matbuffer[(self._buffer_pointer):end] .= 0.0
return spzeros(self._row_nalldofs, self._col_nalldofs)
end
# The sparse matrix is constructed and returned.
S = sparse(
view(self._rowbuffer, 1:(self._buffer_pointer-1)),
view(self._colbuffer, 1:(self._buffer_pointer-1)),
view(self._matbuffer, 1:(self._buffer_pointer-1)),
self._row_nalldofs,
self._col_nalldofs,
)
# Get ready for more assembling
self._buffer_pointer = 1
return S
end
"""
SysmatAssemblerSparseSymm{IT, MBT, IBT} <: AbstractSysmatAssembler
Assembler for a **symmetric square** matrix assembled from symmetric square
matrices.
!!! note
All fields of the datatype are private. The type is manipulated by the
functions `startassembly!`, `assemble!`, and `makematrix!`.
"""
mutable struct SysmatAssemblerSparseSymm{
IT,
T,
MBT<:AbstractVector{T},
IJT<:AbstractVector{IT},
} <: AbstractSysmatAssembler
_buffer_length::IT
_matbuffer::MBT
_rowbuffer::IJT
_colbuffer::IJT
_buffer_pointer::IT
_row_nalldofs::IT
_col_nalldofs::IT
_nomatrixresult::Bool
_force_init::Bool
end
expectedntriples(
a::SysmatAssemblerSparseSymm,
elem_mat_nrows::IT,
elem_mat_ncols::IT,
n_elem_mats::IT,
) where {IT} = Int((elem_mat_nrows * elem_mat_ncols + elem_mat_nrows) / 2 * n_elem_mats)
"""
SysmatAssemblerSparseSymm(z::T, nomatrixresult = false) where {T}
Construct blank system matrix assembler for symmetric matrices. The matrix
entries are of type `T`.
# Example
This is how a symmetric sparse matrix is assembled from two square dense matrices.
```
a = SysmatAssemblerSparseSymm(0.0)
startassembly!(a, 5, 5, 3, 7, 7)
m = [0.24406 0.599773 0.833404 0.0420141
0.786024 0.00206713 0.995379 0.780298
0.845816 0.198459 0.355149 0.224996]
assemble!(a, m'*m, [5 2 1 4], [5 2 1 4])
m = [0.146618 0.53471 0.614342 0.737833
0.479719 0.41354 0.00760941 0.836455
0.254868 0.476189 0.460794 0.00919633
0.159064 0.261821 0.317078 0.77646
0.643538 0.429817 0.59788 0.958909]
assemble!(a, m'*m, [2 3 1 5], [2 3 1 5])
A = makematrix!(a)
```
# See also
SysmatAssemblerSparse
"""
function SysmatAssemblerSparseSymm(z::T, nomatrixresult = false) where {T}
return SysmatAssemblerSparseSymm(
0,
T[z],
Int[0],
Int[0],
0,
0,
0,
nomatrixresult,
false,
)
end
function SysmatAssemblerSparseSymm()
return SysmatAssemblerSparseSymm(zero(Float64))
end
"""
startassembly!(self::SysmatAssemblerSparseSymm{T},
elem_mat_nrows::IT,
elem_mat_ncols::IT,
n_elem_mats::IT,
row_nalldofs::IT,
col_nalldofs::IT;
force_init = false
) where {T, IT<:Integer}
Start the assembly of a global matrix.
The method makes buffers for matrix assembly. It must be called before
the first call to the method `assemble!`.
# Arguments
- `elem_mat_nrows` = row dimension of the element matrix;
- `elem_mat_ncols` = column dimension of the element matrix;
- `n_elem_mats` = number of element matrices;
- `row_nalldofs`= The total number of rows as a tuple;
- `col_nalldofs`= The total number of columns as a tuple.
If the `buffer_pointer` field of the assembler is 0, which is the case after
that assembler was created, the buffers are resized appropriately given the
dimensions on input. Otherwise, the buffers are left completely untouched. The
`buffer_pointer` is set to the beginning of the buffer, namely 1.
# Returns
- `self`: the modified assembler.
!!! note
The buffers may be automatically resized if more numbers are assembled
then initially intended. However, this operation will not necessarily
be efficient and fast.
!!! note
The buffers are initially not filled with anything meaningful.
After the assembly, only the `(self._buffer_pointer - 1)` entries
are meaningful numbers. Beware!
"""
function startassembly!(
self::SysmatAssemblerSparseSymm{T},
elem_mat_nrows::IT,
elem_mat_ncols::IT,
n_elem_mats::IT,
row_nalldofs::IT,
col_nalldofs::IT;
force_init = false,
) where {T,IT<:Integer}
(elem_mat_nrows == elem_mat_ncols) || error("Symmetric sparse matrix is assumed to be assembled from square matrices")
expected_ntriples = expectedntriples(self, elem_mat_nrows, elem_mat_ncols, n_elem_mats)
# Only resize the buffers if the pointer is less than 1; otherwise the
# buffers are already initialized and in use.
if self._buffer_pointer < 1
self._buffer_length = expected_ntriples
resize!(self._rowbuffer, self._buffer_length)
resize!(self._colbuffer, self._buffer_length)
resize!(self._matbuffer, self._buffer_length)
self._buffer_pointer = 1
row_nalldofs == col_nalldofs || error("Row and column info do not agree")
self._row_nalldofs = row_nalldofs
self._col_nalldofs = col_nalldofs
end
# Leave the buffers uninitialized, unless the user requests otherwise
self._force_init = force_init
if force_init
setvectorentries!(self._rowbuffer, 1)
setvectorentries!(self._colbuffer, 1)
setvectorentries!(self._matbuffer, zero(eltype(self._matbuffer)))
end
return self
end
"""
assemble!(
self::SysmatAssemblerSparseSymm,
mat::MT,
dofnums::IT,
ignore
) where {MT, IT}
Assemble a square symmetric matrix.
`dofnums` are the row degree of freedom numbers, the column degree of freedom
number input is ignored (the row and column numbers are assumed to be the same).
"""
function assemble!(
self::SysmatAssemblerSparseSymm,
mat::MBT,
dofnums_row::CIT,
dofnums_col::CIT,
) where {MBT,CIT}
# Assembly of a square symmetric matrix.
# The method assembles the lower triangle of the square symmetric matrix using the two vectors of
# equation numbers for the rows and columns.
nrows = length(dofnums_row)
ncolumns = length(dofnums_col)
(nrows == ncolumns) || error("Size mismatch")
p = self._buffer_pointer
if self._buffer_length < p + (ncolumns * nrows + nrows) / 2 - 1
self = _resize_buffers(self, ncolumns * nrows * 1000)
end
(size(mat) == (nrows, ncolumns)) || error("Size mismatch")
@inbounds for j = 1:ncolumns
dj = dofnums_col[j]
dj < 1 && error("Column degree of freedom < 1")
dj > self._col_nalldofs && error("Column degree of freedom > size")
for i = j:nrows
di = dofnums_row[i]
di < 1 && error("Row degree of freedom < 1")
di > self._row_nalldofs && error("Row degree of freedom > size")
self._matbuffer[p] = mat[i, j] # serialized matrix
self._rowbuffer[p] = dofnums_row[i]
self._colbuffer[p] = dofnums_col[j]
p = p + 1
end
end
self._buffer_pointer = p
return self
end
"""
makematrix!(self::SysmatAssemblerSparseSymm)
Make a sparse symmetric square matrix.
!!! note
If `nomatrixresult` is set to true, dummy (zero) sparse matrix is returned. The entire result of the assembly is preserved in the assembler buffers.
The ends of the buffers are filled with illegal (ignorable) values.
!!! note
When the matrix is constructed (`nomatrixresult` is false), the buffers
are not deallocated, and the `buffer_pointer` is set to 1. It is then
possible to immediately start assembling another matrix.
"""
function makematrix!(self::SysmatAssemblerSparseSymm)
(length(self._rowbuffer) >= self._buffer_pointer - 1) || error("Access outside of buffer")
(length(self._colbuffer) >= self._buffer_pointer - 1) || error("Access outside of buffer")
# We have the option of retaining the assembled results, but not
# constructing the sparse matrix.
if self._nomatrixresult
# Dummy (zero) sparse matrix is returned. The entire result of the
# assembly is preserved in the assembler buffers. The ends of the
# buffers are filled with legal (ignorable) values.
self._rowbuffer[(self._buffer_pointer):end] .= 1
self._colbuffer[(self._buffer_pointer):end] .= 1
self._matbuffer[(self._buffer_pointer):end] .= 0.0
return spzeros(self._row_nalldofs, self._col_nalldofs)
end
# The sparse matrix is constructed and returned. The buffers used for
# the assembly are cleared.
S = sparse(
view(self._rowbuffer, 1:(self._buffer_pointer-1)),
view(self._colbuffer, 1:(self._buffer_pointer-1)),
view(self._matbuffer, 1:(self._buffer_pointer-1)),
self._row_nalldofs,
self._col_nalldofs,
)
# Now we need to construct the other triangle of the matrix. The diagonal
# will be duplicated.
S = S + transpose(S)
@inbounds for j in axes(S, 1)
S[j, j] *= 0.5 # the diagonal is there twice; fix it;
end
# Get ready for more assembling
self._buffer_pointer = 1
return S
end
"""
SysmatAssemblerSparseDiag{T<:Number} <: AbstractSysmatAssembler
Assembler for a **symmetric square diagonal** matrix assembled from symmetric
square diagonal matrices.
Warning: off-diagonal elements of the elementwise matrices will be ignored
during assembly!
!!! note
All fields of the datatype are private. The type is manipulated by the
functions `startassembly!`, `assemble!`, and `makematrix!`.
"""
mutable struct SysmatAssemblerSparseDiag{
IT,
T,
MBT<:AbstractVector{T},
IJT<:AbstractVector{IT},
} <: AbstractSysmatAssembler
# Type for assembling of a sparse global matrix from elementwise matrices.
_buffer_length::IT
_matbuffer::MBT
_rowbuffer::IJT
_colbuffer::IJT
_buffer_pointer::IT
_row_nalldofs::IT
_col_nalldofs::IT
_nomatrixresult::Bool
_force_init::Bool
end
expectedntriples(
a::SysmatAssemblerSparseDiag,
elem_mat_nrows::IT,
elem_mat_ncols::IT,
n_elem_mats::IT,
) where {IT} = (max(elem_mat_nrows, elem_mat_ncols) * n_elem_mats)
"""
SysmatAssemblerSparseDiag(z::T, nomatrixresult = false) where {T}
Construct blank system matrix assembler for square diagonal matrices. The matrix
entries are of type `T`.
"""
function SysmatAssemblerSparseDiag(z::T, nomatrixresult = false) where {T}
return SysmatAssemblerSparseDiag(
0,
T[z],
Int[0],
Int[0],
0,
0,
0,
nomatrixresult,
false,
)
end
function SysmatAssemblerSparseDiag()
return SysmatAssemblerSparseDiag(zero(Float64))
end
"""
startassembly!(self::SysmatAssemblerSparseDiag{T},
elem_mat_nrows::IT,
elem_mat_ncols::IT,
n_elem_mats::IT,
row_nalldofs::IT,
col_nalldofs::IT;
force_init = false
) where {T, IT<:Integer}
Start the assembly of a symmetric square diagonal matrix.
The method makes buffers for matrix assembly. It must be called before
the first call to the method `assemble!`.
# Arguments
- `elem_mat_nrows` = row dimension of the element matrix;
- `elem_mat_ncols` = column dimension of the element matrix;
- `n_elem_mats` = number of element matrices;
- `row_nalldofs`= The total number of rows as a tuple;
- `col_nalldofs`= The total number of columns as a tuple.
The values stored in the buffers are initially undefined!
# Returns
- `self`: the modified assembler.
"""
function startassembly!(
self::SysmatAssemblerSparseDiag{T},
elem_mat_nrows::IT,
elem_mat_ncols::IT,
n_elem_mats::IT,
row_nalldofs::IT,
col_nalldofs::IT;
force_init = false,
) where {T,IT<:Integer}
expected_ntriples = expectedntriples(self, elem_mat_nrows, elem_mat_ncols, n_elem_mats)
# Only resize the buffers if the pointer is less than 1; otherwise the
# buffers are already initialized and in use.
if self._buffer_pointer < 1
self._buffer_length = expected_ntriples
resize!(self._rowbuffer, self._buffer_length)
resize!(self._colbuffer, self._buffer_length)
resize!(self._matbuffer, self._buffer_length)
self._buffer_pointer = 1
row_nalldofs == col_nalldofs || error("Row and column info do not agree")
self._row_nalldofs = row_nalldofs
self._col_nalldofs = col_nalldofs
end
# Leave the buffers uninitialized, unless the user requests otherwise
self._force_init = force_init
if force_init
setvectorentries!(self._rowbuffer, 1)
setvectorentries!(self._colbuffer, 1)
setvectorentries!(self._matbuffer, zero(eltype(self._matbuffer)))
end
return self
end
"""
assemble!(
self::SysmatAssemblerSparseDiag,
mat::MT,
dofnums_row::IV,
dofnums_col::IV,
) where {MT, IV}
Assemble a square symmetric diagonal matrix.
- `dofnums` = the row degree of freedom numbers, the column degree of freedom
number input is ignored (the row and column numbers are assumed to be the same).
- `mat` = **diagonal** square matrix
"""
function assemble!(
self::SysmatAssemblerSparseDiag,
mat::MBT,
dofnums_row::CIT,
dofnums_col::CIT,
) where {MBT,CIT}
# Assembly of a square symmetric matrix.
# The method assembles the lower triangle of the square symmetric matrix using the two vectors of
# equation numbers for the rows and columns.
nrows = length(dofnums_row)
ncolumns = length(dofnums_col)
(nrows == ncolumns) || error("Size mismatch")
p = self._buffer_pointer
if self._buffer_length < p + ncolumns * nrows - 1
self = _resize_buffers(self, ncolumns * nrows * 1000)
end
(size(mat) == (nrows, ncolumns)) || error("Size mismatch")
@inbounds for j = 1:ncolumns
dj = dofnums_col[j]
dj < 1 && error("Column degree of freedom < 1")
dj > self._col_nalldofs && error("Column degree of freedom > size")
self._matbuffer[p] = mat[j, j] # serialized matrix
self._rowbuffer[p] = dj
self._colbuffer[p] = dj
p = p + 1
end
self._buffer_pointer = p
return self
end
"""
makematrix!(self::SysmatAssemblerSparseDiag)
Make a sparse symmetric square diagonal matrix.
!!! note
If `nomatrixresult` is set to true, dummy (zero) sparse matrix is returned. The entire result of the assembly is preserved in the assembler buffers.
The ends of the buffers are filled with illegal (ignorable) values.
!!! note
When the matrix is constructed (`nomatrixresult` is false), the buffers
are not deallocated, and the `buffer_pointer` is set to 1. It is then
possible to immediately start assembling another matrix.
"""
function makematrix!(self::SysmatAssemblerSparseDiag)
(length(self._rowbuffer) >= self._buffer_pointer - 1) || error("Access outside of buffer")
(length(self._colbuffer) >= self._buffer_pointer - 1) || error("Access outside of buffer")
# We have the option of retaining the assembled results, but not
# constructing the sparse matrix.
if self._nomatrixresult
# Dummy (zero) sparse matrix is returned. The entire result of the
# assembly is preserved in the assembler buffers. The ends of the
# buffers are filled with illegal (ignorable) values.
self._rowbuffer[(self._buffer_pointer):end] .= 0
self._colbuffer[(self._buffer_pointer):end] .= 0
self._matbuffer[(self._buffer_pointer):end] .= 0.0
return spzeros(self._row_nalldofs, self._col_nalldofs)
end
# The sparse matrix is constructed and returned. The buffers used for
# the assembly are cleared.
S = sparse(
view(self._rowbuffer, 1:(self._buffer_pointer-1)),
view(self._colbuffer, 1:(self._buffer_pointer-1)),
view(self._matbuffer, 1:(self._buffer_pointer-1)),
self._row_nalldofs,
self._col_nalldofs,
)
# Get ready for more assembling
self._buffer_pointer = 1
return S
end
# =============================================================================
# =============================================================================
# =============================================================================
# =============================================================================
"""
AbstractSysvecAssembler
Abstract type of system vector assembler.
"""
abstract type AbstractSysvecAssembler end
eltype(a::A) where {A<:AbstractSysvecAssembler} = eltype(a._buffer)
"""
startassembly!(self::SysvecAssembler{T}, ndofs_row::FInt) where {T<:Number}
Start assembly.
The method makes the buffer for the vector assembly. It must be called before
the first call to the method assemble.
- `elem_mat_nmatrices` = number of element matrices expected to be processed
during the assembly.
- `ndofs_row`= Total number of degrees of freedom.
# Returns
- `self`: the modified assembler.
"""
function startassembly!(
self::SV,
row_nalldofs::Tuple{IT,IT},
) where {SV<:AbstractSysvecAssembler,IT} end
"""
assemble!(self::SysvecAssembler{T}, vec::MV,
dofnums::D) where {T<:Number, MV<:AbstractArray{T}, D<:AbstractArray{FInt}}
Assemble an elementwise vector.
The method assembles a column element vector using the vector of degree of
freedom numbers for the rows.
"""
function assemble!(self::SV, vec::MV, dofnums::IV) where {SV<:AbstractSysvecAssembler,MV,IV} end
"""
makevector!(self::SysvecAssembler)
Make the global vector.
"""
function makevector!(self::SV) where {SV<:AbstractSysvecAssembler} end
"""
SysvecAssembler
Assembler for the system vector.
"""
mutable struct SysvecAssembler{VBT,IT} <: AbstractSysvecAssembler
_buffer::VBT
_row_nalldofs::IT
end
"""
SysvecAssembler(z::T) where {T}
Construct blank system vector assembler. The vector entries are of type `T`
determined by the zero value.
"""
function SysvecAssembler(z::T) where {T}
return SysvecAssembler(T[z], 1)
end
function SysvecAssembler()
return SysvecAssembler(zero(Float64))
end
"""
startassembly!(self::SysvecAssembler, ndofs_row)
Start assembly.
The method makes the buffer for the vector assembly. It must be called before
the first call to the method assemble.
`ndofs_row`= Total number of degrees of freedom.
# Returns
- `self`: the modified assembler.
"""
function startassembly!(self::SysvecAssembler, row_nalldofs::IT) where {IT<:Integer}
self._row_nalldofs = row_nalldofs
resize!(self._buffer, self._row_nalldofs)
self._buffer .= 0
return self
end
"""
assemble!(self::SysvecAssembler{T}, vec::MV,
dofnums::D) where {T<:Number, MV<:AbstractArray{T}, D<:AbstractArray{FInt}}
Assemble an elementwise vector.
The method assembles a column element vector using the vector of degree of
freedom numbers for the rows.
"""
function assemble!(self::SysvecAssembler, vec::MV, dofnums::IV) where {MV,IV}
@inbounds for i in eachindex(dofnums)
gi = dofnums[i]
gi < 1 && error("Row degree of freedom < 1")
gi > self._row_nalldofs && error("Row degree of freedom > size")
self._buffer[gi] += vec[i]
end
end
"""
makevector!(self::SysvecAssembler)
Make the global vector.
"""
function makevector!(self::SysvecAssembler)
return deepcopy(self._buffer)
end
"""
SysmatAssemblerSparseHRZLumpingSymm{IT, MBT, IBT} <: AbstractSysmatAssembler
Assembler for a **symmetric lumped square** matrix assembled from **symmetric square**
matrices.
Reference: A note on mass lumping and related processes in the finite element method,
E. Hinton, T. Rock, O. C. Zienkiewicz, Earthquake Engineering & Structural Dynamics,
volume 4, number 3, 245--249, 1976.
!!! note
All fields of the datatype are private. The type is manipulated by the
functions `startassembly!`, `assemble!`, and `makematrix!`.
!!! note
This assembler can compute and assemble diagonalized mass matrices.
However, if the meaning of the entries of the mass matrix differs
(translation versus rotation), the mass matrices will not be computed
correctly. Put bluntly: it can only be used for homogeneous mass matrices,
all translation degrees of freedom, for instance.
"""
mutable struct SysmatAssemblerSparseHRZLumpingSymm{
IT,
T,
MBT<:AbstractVector{T},
IJT<:AbstractVector{IT},
} <: AbstractSysmatAssembler
_buffer_length::IT
_matbuffer::MBT
_rowbuffer::IJT
_colbuffer::IJT
_buffer_pointer::IT
_row_nalldofs::IT
_col_nalldofs::IT
_nomatrixresult::Bool
_force_init::Bool
end
expectedntriples(
a::SysmatAssemblerSparseHRZLumpingSymm,
elem_mat_nrows::IT,
elem_mat_ncols::IT,
n_elem_mats::IT,
) where {IT} = (max(elem_mat_nrows, elem_mat_ncols) * n_elem_mats)
"""
SysmatAssemblerSparseHRZLumpingSymm(z::T, nomatrixresult = false) where {T}
Construct blank system matrix assembler. The matrix entries are of type `T`.
"""
function SysmatAssemblerSparseHRZLumpingSymm(z::T, nomatrixresult = false) where {T}
return SysmatAssemblerSparseHRZLumpingSymm(
0,
T[z],
Int[0],
Int[0],
0,
0,
0,
nomatrixresult,
false,
)
end
function SysmatAssemblerSparseHRZLumpingSymm()
return SysmatAssemblerSparseHRZLumpingSymm(zero(Float64))
end
"""
startassembly!(self::SysmatAssemblerSparseHRZLumpingSymm{T},
elem_mat_nrows::IT,
elem_mat_ncols::IT,
n_elem_mats::IT,
row_nalldofs::IT,
col_nalldofs::IT;
force_init = false
) where {T, IT<:Integer}
Start the assembly of a symmetric lumped diagonal square global matrix.